Merge pull request #5 from cindytsai/fixCI

Fix Workflow and Packaging

.editorconfig

@@ -10,6 +10,9 @@ insert_final_newline = true
 charset = utf-8
 end_of_line = lf
 
+[*.{yaml,yml}]
+indent_size = 2
+
 [*.bat]
 indent_style = tab
 end_of_line = crlf

.github/ISSUE_TEMPLATE.md

@@ -1,15 +1,27 @@
-* libyt frontend for yt version:
+* yt_libyt version:
+* libyt version:
 * Python version:
 * Operating System:
 
-### Description
+### Summary
 
 Describe what you were trying to get done.
 Tell us what happened, what went wrong, and what you expected to happen.
 
 ### What I Did
 
+#### Input
+
 ```
 Paste the command(s) you ran and the output.
+```
+
+#### Actual Outcome
+
+```
 If there was a crash, please include the traceback here.
 ```
+
+#### Expected Outcome
+
+

.github/dependabot.yml

@@ -0,0 +1,20 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+      day: "monday"
+      time: "09:00"
+
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+      day: "monday"
+      time: "09:00"

.github/workflows/build-test.yml

@@ -1,33 +1,43 @@
-name: Run tests
+name: Run Tests
 
-on: [push, pull_request]
+on:
+  - push
+  - pull_request
+  - workflow_dispatch
+  - workflow_call
 
 jobs:
-  build:
-
+  test:
+    name: Test (pytest)
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
-
+        python:
+          - version: "3.7"
+            toxenv: "py37"
+          - version: "3.8"
+            toxenv: "py38"
+          - version: "3.9"
+            toxenv: "py39"
+          - version: "3.10"
+            toxenv: "py310"
+          - version: "3.11"
+            toxenv: "py311"
+          - version: "3.12"
+            toxenv: "py312"
     steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install flake8 pytest
-        if [ -f tests/test_requirements.txt ]; then python -m pip install -r tests/test_requirements.txt; fi
-    - name: Setup yt_idv
-      run: |
-        python -m pip install -e .
-    - name: Run Tests
-      run: pytest --html=report.html --self-contained-html
-    - uses: actions/upload-artifact@v2
-      name: Upload pytest report
-      with:
-        name: pytest-report
-        path: report.html
+      - uses: actions/checkout@v3
+      - uses: actions/[email protected]
+        with:
+          python-version: ${{ matrix.python.version }}
+      - name: Install tox
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install tox
+      - name: Run pytest
+        run: tox -e ${{ matrix.python.toxenv }} -- --html=report.html --self-contained-html
+      - name: Upload pytest report
+        uses: actions/upload-artifact@v3
+        with:
+          name: pytest-report-${{ matrix.python.toxenv }}
+          path: report.html

.github/workflows/codeql.yml

@@ -0,0 +1,82 @@
+# For most projects, this workflow file will not need changing; you simply need
+# to commit it to your repository.
+#
+# You may wish to alter this file to override the set of languages analyzed,
+# or to provide custom queries or build logic.
+#
+# ******** NOTE ********
+# We have attempted to detect the languages in your repository. Please check
+# the `language` matrix defined below to confirm you have the correct set of
+# supported CodeQL languages.
+#
+name: "CodeQL"
+
+on:
+  push:
+    branches: [ "main" ]
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches: [ "main" ]
+  schedule:
+    - cron: '0 9 * * 1' # at 09:00am on monday
+
+jobs:
+  analyze:
+    name: Analyze
+    # Runner size impacts CodeQL analysis time. To learn more, please see:
+    #   - https://gh.io/recommended-hardware-resources-for-running-codeql
+    #   - https://gh.io/supported-runners-and-hardware-resources
+    #   - https://gh.io/using-larger-runners
+    # Consider using larger runners for possible analysis time improvements.
+    runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
+    timeout-minutes: ${{ (matrix.language == 'swift' && 120) || 360 }}
+    permissions:
+      actions: read
+      contents: read
+      security-events: write
+
+    strategy:
+      fail-fast: false
+      matrix:
+        language: [ 'python' ]
+        # CodeQL supports [ 'c-cpp', 'csharp', 'go', 'java-kotlin', 'javascript-typescript', 'python', 'ruby', 'swift' ]
+        # Use only 'java-kotlin' to analyze code written in Java, Kotlin or both
+        # Use only 'javascript-typescript' to analyze code written in JavaScript, TypeScript or both
+        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v4
+
+    # Initializes the CodeQL tools for scanning.
+    - name: Initialize CodeQL
+      uses: github/codeql-action/init@v2
+      with:
+        languages: ${{ matrix.language }}
+        # If you wish to specify custom queries, you can do so here or in a config file.
+        # By default, queries listed here will override any specified in a config file.
+        # Prefix the list here with "+" to use these queries and those in the config file.
+
+        # For more details on CodeQL's query packs, refer to: https://docs.github.com/en/code-security/code-scanning/automatically-scanning-your-code-for-vulnerabilities-and-errors/configuring-code-scanning#using-queries-in-ql-packs
+        # queries: security-extended,security-and-quality
+
+
+    # Autobuild attempts to build any compiled languages (C/C++, C#, Go, Java, or Swift).
+    # If this step fails, then you should remove it and run the build manually (see below)
+    - name: Autobuild
+      uses: github/codeql-action/autobuild@v2
+
+    # ℹ️ Command-line programs to run using the OS shell.
+    # 📚 See https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsrun
+
+    #   If the Autobuild fails above, remove it and uncomment the following three lines.
+    #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
+
+    # - run: |
+    #     echo "Run, Build Application using script"
+    #     ./location_of_script_within_repo/buildscript.sh
+
+    - name: Perform CodeQL Analysis
+      uses: github/codeql-action/analyze@v2
+      with:
+        category: "/language:${{matrix.language}}"

.github/workflows/publish-to-pypi.yml

@@ -1,36 +1,75 @@
-name: Publish Python distributions to PyPI and TestPyPI
+name: Release and Publish
 
 on:
   push:
-    # Sequence of patterns matched against refs/tags
     tags:
-      - 'v*' # Push events to matching v*, i.e. v1.0, v20.15.10
+      - 'v*' # ex: "v1.0"
 
 jobs:
-  build-and-publish:
-    name: Build and Publish
-    runs-on: ubuntu-18.04
+  style_check:
+    name: Style Check
+    uses: ./.github/workflows/style-check.yml
+
+  run_tests:
+    name: Run Tests
+    uses: ./.github/workflows/build-test.yml
+
+  build_source:
+    name: Build Sources
+    runs-on: ubuntu-latest
+    needs:
+      - style_check
+      - run_tests
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/[email protected]
+        with:
+          python-version: "3.10"
+      - name: Install build
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install build
+      - name: Build source tarball
+        run: python -m build --sdist --outdir dist
+      - name: Upload source tarball
+        uses: actions/upload-artifact@v3
+        with:
+          path: ./dist/*.tar.gz
+
+  build_wheels:
+    name: Build Wheels
+    runs-on: ubuntu-latest
+    needs:
+      - style_check
+      - run_tests
+    steps:
+      - uses: actions/checkout@v3
+      - uses: actions/[email protected]
+        with:
+          python-version: "3.10"
+      - run: python -m pip install --upgrade pip
+      - name: Build pure Python wheels
+        run: pip wheel . -w wheels/ --no-deps
+      - name: Upload builds
+        uses: actions/upload-artifact@v3
+        with:
+          path: ./wheels/*.whl
+
+  publish_to_pypi:
+    name: Publish to PyPI
+    if: startsWith(github.event.ref, 'refs/tags/v')
+    needs:
+      - build_source
+      - build_wheels
+    runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@master
-    - name: Set up Python 3.7
-      uses: actions/setup-python@v1
-      with:
-        python-version: 3.7
-    - name: Install pypa/build
-      run: >-
-          python -m
-          pip install
-          build
-          --user
-    - name: Build source tarball
-      run: >-
-          python -m
-          build
-          --sdist
-          --outdir dist/
-          .
-    - name: Publish distribution to PyPI
-      if: startsWith(github.ref, 'refs/tags')
-      uses: pypa/gh-action-pypi-publish@master
-      with:
-        password: ${{ secrets.PYPI_API_TOKEN }}
+      - name: Download source tarball and builds
+        uses: actions/download-artifact@v3
+        with:
+          name: artifact
+          path: ./dist/
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }} # TODO: Add token in github settings