adding -f Mark reads as QCFAIL instead of excluding them to trim. #70
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FredDodd6
changed the title
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We're on hold with this as it still removes records that we would like to retain (but mark as QCFAIL) for reanalysis. |
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Good compromise might be to put it behind an option? Code written then, just need to update profile as required later? |
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@m-bull (sorry for the late reply) - I think the code will have to change to accommodate further change required in ivar... |
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Hello all, with andersen-lab/ivar@29cf79d (resolving andersen-lab/ivar#73), in cases where the insert size is smaller than the read length, the read is treated an unpaired and both forward and reverse primers are trimmed off. |
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