fix test

chanzuckerberg · Sep 22, 2023 · d85e0d5 · d85e0d5
1 parent 9e73307
commit d85e0d5
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/cellxgene_schema_cli/cellxgene_schema/validate.py b/cellxgene_schema_cli/cellxgene_schema/validate.py
@@ -1215,7 +1215,7 @@ def validate(
     )
     to_memory = (
         add_labels_file is not None or write_check
-    )  # if we're adding labels or doing a full validation, read to memory
+    )  # if we're adding labels or doing a write_check, then read to memory
     validator.validate_adata(h5ad_path, to_memory=to_memory, write_check=write_check)
     logger.info(f"Validation complete in {datetime.now() - start} with status is_valid={validator.is_valid}")
 

diff --git a/cellxgene_schema_cli/tests/test_validate.py b/cellxgene_schema_cli/tests/test_validate.py
@@ -324,7 +324,7 @@ def test__validate_with_write_check_false(self, mock_write_check, mock_read_h5ad
     @mock.patch("cellxgene_schema.validate.read_h5ad", wraps=read_h5ad)
     @mock.patch("cellxgene_schema.validate.Validator.write_check")
     def test__validate_with_write_check_true(self, mock_write_check, mock_read_h5ad):
-        validate(h5ad_valid, full=True)
+        validate(h5ad_valid, write_check=True)
         mock_write_check.assert_called_once()
         mock_read_h5ad.assert_called_with(h5ad_valid, True)