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updated changelog (#1081)
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brianraymor authored Nov 5, 2024
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29 changes: 27 additions & 2 deletions schema/drafts/5.3.0.md
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Expand Up @@ -1881,15 +1881,40 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem

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## Appendix A. Changelog

### schema v5.3.0
* General Requirements
* Required Ontologies
* uns (Dataset metadata)

* X (Matrix Layers)
* Updated _Visium Spatial Gene Expression_ table row to _Descendants of Visium Spatial Gene Expression_
* Added matrix requirements for _Visium CytAssist Spatial Gene Expression, 11mm_.
* obs (Cell metadata)
* Updated the requirements for `array_col`:
* MUST be annotated if the `assay_ontology_term_id` is a descendant of _Visium Spatial Gene Expression_
* Added ranges for _Visium CytAssist Spatial Gene Expression, 6.5mm_ and _Visium CytAssist Spatial Gene Expression, 11mm_
* Updated the requirements for `array_row`:
* MUST be annotated if the `assay_ontology_term_id` is a descendant of _Visium Spatial Gene Expression_
* Added ranges for _Visium CytAssist Spatial Gene Expression, 6.5mm_ and _Visium CytAssist Spatial Gene Expression, 11mm_
* Updated the requirements for `assay_ontology_term_id` to include descendants of _Visium Spatial Gene Expression_. All observations must contain the same value. Also updated recommended values for assays.
* Updated the requirements for `cell_type_ontology_term_id` to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for `in_tissue` to include descendants of _Visium Spatial Gene Expression_.
* obsm (Embeddings)
* Updated the requirements for `spatial` to include descendants of _Visium Spatial Gene Expression_ and to prohibit 'Not a Number' values.
* Updated the requirements for `X_{suffix}` to include descendants of _Visium Spatial Gene Expression_.
* uns (Dataset Metadata)
* Updated `schema_reference` to <code>"https://github.com/chanzuckerberg/single-cell-curation/blob/main/schema/5.3.0/schema.md"</code>
* Updated `schema_version` to <code>"5.3.0"</code>
* Updated the requirements for `spatial` to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial['is_single']</code> to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial[<i>library_id</i>]</code> to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial[<i>library_id</i>]['images']</code> to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial[<i>library_id</i>]['images']['fullres']</code> to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial[<i>library_id</i>]['images']['hires']</code> to include descendants of _Visium Spatial Gene Expression_. Added requirements for <i>Visium CytAssist Spatial Gene Expression, 11mm</i>.
* Updated the requirements for <code>spatial[<i>library_id</i>]['scalefactors']</code> to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial[<i>library_id</i>]['scalefactors']['spot_diameter_fullres']</code> to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for <code>spatial[<i>library_id</i>]['scalefactors']['tissue_hires_scalef']</code> to include descendants of _Visium Spatial Gene Expression_.

### schema v5.2.0

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