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Scheduled monthly dependency update for December #432

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Scheduled monthly dependency update for December #432

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decc38d
Pin cython to latest version 3.0.11
pyup-bot Dec 1, 2024
f30ed4c
Pin numpy to latest version 2.1.3
pyup-bot Dec 1, 2024
92b39bc
Pin dask to latest version 2024.11.2
pyup-bot Dec 1, 2024
824e323
Pin scipy to latest version 1.14.1
pyup-bot Dec 1, 2024
971d77e
Pin matplotlib to latest version 3.9.3
pyup-bot Dec 1, 2024
cfce2a8
Pin seaborn to latest version 0.13.2
pyup-bot Dec 1, 2024
63ac15e
Pin pandas to latest version 2.2.3
pyup-bot Dec 1, 2024
6e69c73
Pin protopunica to latest version 0.14.8.post2
pyup-bot Dec 1, 2024
327bc15
Pin scikit-learn to latest version 1.5.2
pyup-bot Dec 1, 2024
ef74354
Pin h5py to latest version 3.12.1
pyup-bot Dec 1, 2024
4b9b905
Pin numexpr to latest version 2.10.2
pyup-bot Dec 1, 2024
d5714b6
Pin zarr to latest version 2.18.3
pyup-bot Dec 1, 2024
e13d48f
Pin hmmlearn to latest version 0.3.3
pyup-bot Dec 1, 2024
5d8d843
Pin ipython to latest version 8.30.0
pyup-bot Dec 1, 2024
639f114
Pin pyfasta to latest version 0.5.2
pyup-bot Dec 1, 2024
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6 changes: 3 additions & 3 deletions requirements_dev_base.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# required
cython
numpy
dask[array]
cython==3.0.11
numpy==2.1.3
dask[array]==2024.11.2
24 changes: 12 additions & 12 deletions requirements_dev_optional.txt
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
# optional
scipy
matplotlib
seaborn
pandas
scikit-learn
h5py
numexpr
zarr
hmmlearn
protopunica
pyfasta
ipython
scipy==1.14.1
matplotlib==3.9.3
seaborn==0.13.2
pandas==2.2.3
scikit-learn==1.5.2
h5py==3.12.1
numexpr==2.10.2
zarr==2.18.3
hmmlearn==0.3.3
protopunica==0.14.8.post2
pyfasta==0.5.2
ipython==8.30.0