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Scheduled monthly dependency update for November #431

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Scheduled monthly dependency update for November #431

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93b2a82
Pin cython to latest version 3.0.11
pyup-bot Nov 1, 2024
1ca5d21
Pin numpy to latest version 2.1.2
pyup-bot Nov 1, 2024
bd579ab
Pin dask to latest version 2024.10.0
pyup-bot Nov 1, 2024
9ff2243
Pin scipy to latest version 1.14.1
pyup-bot Nov 1, 2024
b532165
Pin matplotlib to latest version 3.9.2
pyup-bot Nov 1, 2024
67cdf29
Pin seaborn to latest version 0.13.2
pyup-bot Nov 1, 2024
6b8b3cb
Pin pandas to latest version 2.2.3
pyup-bot Nov 1, 2024
68c6aa5
Pin protopunica to latest version 0.14.8.post2
pyup-bot Nov 1, 2024
372867e
Pin scikit-learn to latest version 1.5.2
pyup-bot Nov 1, 2024
41bec46
Pin h5py to latest version 3.12.1
pyup-bot Nov 1, 2024
f3263ad
Pin numexpr to latest version 2.10.1
pyup-bot Nov 1, 2024
c02e4a1
Pin zarr to latest version 2.18.3
pyup-bot Nov 1, 2024
f6ad192
Pin hmmlearn to latest version 0.3.3
pyup-bot Nov 1, 2024
ab0b6d5
Pin ipython to latest version 8.29.0
pyup-bot Nov 1, 2024
0e03a85
Pin pyfasta to latest version 0.5.2
pyup-bot Nov 1, 2024
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6 changes: 3 additions & 3 deletions requirements_dev_base.txt
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# required
cython
numpy
dask[array]
cython==3.0.11
numpy==2.1.2
dask[array]==2024.10.0
24 changes: 12 additions & 12 deletions requirements_dev_optional.txt
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
# optional
scipy
matplotlib
seaborn
pandas
scikit-learn
h5py
numexpr
zarr
hmmlearn
protopunica
pyfasta
ipython
scipy==1.14.1
matplotlib==3.9.2
seaborn==0.13.2
pandas==2.2.3
scikit-learn==1.5.2
h5py==3.12.1
numexpr==2.10.1
zarr==2.18.3
hmmlearn==0.3.3
protopunica==0.14.8.post2
pyfasta==0.5.2
ipython==8.29.0