Scheduled monthly dependency update for March #58
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| name: Test | |
| on: | |
| - pull_request | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: | |
| - ubuntu-latest | |
| - windows-latest | |
| - macos-latest | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Prerequisites (Linux) | |
| if: matrix.platform == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get -y install tabix | |
| - name: Install | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements_dev_base.txt -r requirements_test.txt -r requirements_dev_optional.txt -r requirements_rtfd.txt | |
| pip install -e . | |
| - name: Lint | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 allel --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 allel --count --exit-zero --max-line-length=127 --statistics | |
| - name: Test | |
| run: | | |
| pytest -v allel | |
| - name: Test with doctest | |
| if: matrix.platform == 'ubuntu-latest' && matrix.python-version == '3.10' | |
| run: | | |
| pytest -v --cov=allel --doctest-modules allel | |
| coverage report -m | |
| - name: Build docs | |
| if: matrix.platform == 'ubuntu-latest' && matrix.python-version == '3.10' | |
| run: | | |
| cd docs && make html |