[json schema] Do not throw errors when parsing non annotated parameters

CHANGELOG.md

@@ -18,6 +18,7 @@ Small fixes should be here.
 ## Features
 
 ## Improvements
+* `get_json_schema_from_method_signature` now throws a more informative error when an untyped parameter is passed [#1157](https://github.com/catalystneuro/neuroconv/pull/1157)
 
 
 # v0.6.6 (December 20, 2024)
@@ -36,6 +37,7 @@ Small fixes should be here.
 * `SpikeGLXNIDQInterface` is no longer written as an ElectricalSeries [#1152](https://github.com/catalystneuro/neuroconv/pull/1152)
 * Fix a bug on ecephys interfaces where extra electrode group and devices were written if the property of the "group_name" was set in the recording extractor [#1164](https://github.com/catalystneuro/neuroconv/pull/1164)
 
+
 ## Features
 * Propagate the `unit_electrode_indices` argument from the spikeinterface tools to `BaseSortingExtractorInterface`. This allows users to map units to the electrode table when adding sorting data [PR #1124](https://github.com/catalystneuro/neuroconv/pull/1124)
 * Imaging interfaces have a new conversion option `always_write_timestamps` that can be used to force writing timestamps even if neuroconv's heuristics indicates regular sampling rate [PR #1125](https://github.com/catalystneuro/neuroconv/pull/1125)
@@ -50,7 +52,7 @@ Small fixes should be here.
 * Use mixing tests for ecephy's mocks [PR #1136](https://github.com/catalystneuro/neuroconv/pull/1136)
 * Use pytest format for dandi tests to avoid window permission error on teardown [PR #1151](https://github.com/catalystneuro/neuroconv/pull/1151)
 * Added many docstrings for public functions [PR #1063](https://github.com/catalystneuro/neuroconv/pull/1063)
-* Clean up with warnings and deprecations in the testing framework [PR #1158](https://github.com/catalystneuro/neuroconv/pull/1158)
+* Clean up warnings and deprecations in the testing framework for the ecephys pipeline [PR #1158](https://github.com/catalystneuro/neuroconv/pull/1158)
 * Enhance the typing of the signature on the `NWBConverter` by adding zarr as a literal option on the backend and backend configuration [PR #1160](https://github.com/catalystneuro/neuroconv/pull/1160)
 
 

src/neuroconv/datainterfaces/ecephys/basesortingextractorinterface.py

@@ -18,7 +18,7 @@ class BaseSortingExtractorInterface(BaseExtractorInterface):
 
     ExtractorModuleName = "spikeinterface.extractors"
 
-    def __init__(self, verbose=True, **source_data):
+    def __init__(self, verbose: bool = False, **source_data):
         super().__init__(**source_data)
         self.sorting_extractor = self.get_extractor()(**source_data)
         self.verbose = verbose

src/neuroconv/utils/json_schema.py

@@ -140,12 +140,16 @@ def get_json_schema_from_method_signature(method: Callable, exclude: Optional[li
             additional_properties = True
             continue
 
-        annotation = parameter.annotation
+        # Raise error if the type annotation is missing as a json schema cannot be generated in that case
+        if parameter.annotation is inspect._empty:
+            raise TypeError(
+                f"Parameter '{argument_name}' in method '{method_display}' is missing a type annotation. "
+                f"Either add a type annotation for '{argument_name}' or add it to the exclude list."
+            )
 
         # Pydantic uses ellipsis for required
         pydantic_default = ... if parameter.default is inspect._empty else parameter.default
-
-        arguments_to_annotations.update({argument_name: (annotation, pydantic_default)})
+        arguments_to_annotations.update({argument_name: (parameter.annotation, pydantic_default)})
 
     # The ConfigDict is required to support custom types like NumPy arrays
     model = pydantic.create_model(

tests/test_minimal/test_utils/test_get_json_schema_from_method_signature.py

@@ -424,3 +424,20 @@ def test_class_method(self, integer: int):
     }
 
     assert test_json_schema == expected_json_schema
+
+
+def test_json_schema_raises_error_for_missing_type_annotations():
+    """Test that attempting to generate a JSON schema for a method with missing type annotations raises a TypeError."""
+    # https://github.com/catalystneuro/neuroconv/pull/1157
+
+    def test_method(param_with_type: int, param_without_type, param_with_default="default_value"):
+        pass
+
+    with pytest.raises(
+        TypeError,
+        match=(
+            "Parameter 'param_without_type' in method 'test_method' is missing a type annotation. "
+            "Either add a type annotation for 'param_without_type' or add it to the exclude list."
+        ),
+    ):
+        get_json_schema_from_method_signature(method=test_method)