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1. echtvar echtvar Public

   using all the bits for echt rapid variant annotation and filtering

   Rust 147 10

2. mosdepth mosdepth Public

   fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

   Nim 704 101

3. slivar slivar Public

   genetic variant expressions, annotation, and filtering for great good.

   Nim 253 23

4. somalier somalier Public

   fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

   Nim 272 38

5. vcfanno vcfanno Public

   annotate a VCF with other VCFs/BEDs/tabixed files

   Go 367 56

6. cyvcf2 cyvcf2 Public

   cython + htslib == fast VCF and BCF processing

   Cython 383 72