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feat: new DRAGEN import workflow #459

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feat: new DRAGEN import workflow #459

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xiamaz
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@xiamaz xiamaz commented Oct 25, 2023

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@xiamaz xiamaz changed the title New DRAGEN import workflow feat: new DRAGEN import workflow Oct 25, 2023
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  • Please format your Python code with black: make black
  • Please format your Snakemake code with snakefmt: make snakefmt
  • Please organize your imports isorts: make isort
  • Please ensure that your code passes flake8: make flake8

You can trigger all lints locally by running make lint

xiamaz
xiamaz commented Jan 31, 2024
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snappy_pipeline/workflows/varfish_export_external/__init__.py
"""

@define(frozen=True)
class LinkInConfig:
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This defines the search pattern

xiamaz
xiamaz commented Jan 31, 2024
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snappy_pipeline/workflows/varfish_export_external/__init__.py
super().__init__(parent)

self.link_ins = [
LinkInConfig(**c) for c in self.config["link_ins"]
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This is where this needs to be defined in config

@sellth sellth force-pushed the main branch 3 times, most recently from 9664352 to bf39678 Compare June 28, 2024 16:18
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@xiamaz @Nicolai-vKuegelgen