Kiley -- Consensus module

Author: Bansho Masutani

Overview

In this crate, I implement

(Banded-)Ternary alignment with edit distance ,
(Banded-)Bialignment with edit distance,
(Banded-)pair hidden Markov model with forward/backward/viterbi algorithm, and
(Banded-)generalized pair hidden Markov model with forward/backward/viterbi/pseudo-Baum-Whelch algorithm

In addition, there is a function to estimate the maximum-likelihood sequence based on a pair hidden Markov model.

MIT

Name		Name	Last commit message	Last commit date
Latest commit History 140 Commits
.github/workflows		.github/workflows
src		src
static		static
.gitignore		.gitignore
.gitmodules		.gitmodules
Cargo.lock		Cargo.lock
Cargo.toml		Cargo.toml
LICENSE.txt		LICENSE.txt
README.md		README.md