Key scripts used to compute results presented in " GENOME-WIDE REPLICATION LANDSCAPE OF CANDIDA GLABRATA"
In order to determine the whole replication program of C. glabrata genome and its general chromosomal organization, we used deep-sequencing and Chromosome Conformation Capture (3C) experiments.
This directory contains a set of scripts used to abnalyse the data describe in : "GENOME-WIDE REPLICATION LANDSCAPE OF CANDIDA GLABRATA" This is not a complet package by rather a separate set of scripts.
- origs.R: gather peaks calling related function
- ars.R: routines for ARS definition
- ...
Cagl_rpl is realed under the GNU public license. See the LICENSE file for more info.
Note : rest of the pipeline will be upload shortly ;-)