Build an iterative phonon flow #871
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with Python 3.10 and 3.11 | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Testing Linux | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| split: [1, 2, 3, 4, 5] # Number of splits | |
| steps: | |
| - name: Fetch Most Recent Docker Image Tag | |
| run: | | |
| TAG=$(curl -H "Accept: application/vnd.github.v3+json" \ | |
| -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \ | |
| https://api.github.com/orgs/autoatml/packages/container/autoplex%2Fautoplex-python-3.10/versions \ | |
| | jq -r 'sort_by(.created_at) | reverse | .[0].metadata.container.tags[0]') | |
| echo "VERSION=$TAG" >> $GITHUB_ENV | |
| - uses: actions/checkout@v4 | |
| - name: Run tests using Docker image for Python ${{ matrix.python-version }} | |
| run: | | |
| docker pull ghcr.io/autoatml/autoplex/autoplex-python-${{ matrix.python-version }}:${{ env.VERSION }} | |
| docker run --rm \ | |
| -v ${{ github.workspace }}:/workspace \ | |
| -w /workspace \ | |
| ghcr.io/autoatml/autoplex/autoplex-python-${{ matrix.python-version }}:${{ env.VERSION }} \ | |
| bash -c " | |
| python -m pip install --upgrade pip && \ | |
| python -m uv cache clean | |
| python -m uv pip install --prerelease=allow .[strict,tests] && \ | |
| OMP_NUM_THREADS=1 pytest --cache-clear --cov=autoplex --cov-report term-missing --cov-append --splits 5 --group ${{ matrix.split }} -vv --durations-path /workspace/tests/test_data/.pytest-split-durations --store-durations | |
| " | |
| - name: Upload test durations artifact | |
| if: matrix.python-version == '3.10' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-durations-${{ matrix.python-version }}-${{ matrix.split }} | |
| include-hidden-files: true | |
| path: ./tests/test_data/.pytest-split-durations | |
| - name: Upload coverage | |
| if: matrix.python-version == '3.10' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-${{ matrix.python-version }}-${{ matrix.split }} | |
| include-hidden-files: true | |
| path: ./.coverage | |
| commit-durations: | |
| if: github.repository_owner == 'autoatml' && github.ref == 'refs/heads/main' | |
| needs: build | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} # enables conda/mamba env activation by reading bash profile | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| - name: Create mamba environment | |
| run: | | |
| micromamba create -n autoplex_tests python=3.10 --yes | |
| - name: Install uv | |
| run: micromamba run -n autoplex_tests pip install uv | |
| - name: Install autoplex and dependencies | |
| run: | | |
| micromamba activate autoplex_tests | |
| uv pip install --upgrade pip | |
| uv pip install --prerelease=allow .[tests,strict] | |
| - name: Download test duration artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: test-durations-* | |
| - name: Compute average of test durations | |
| run: | | |
| micromamba activate autoplex_tests | |
| python3 .github/scripts/average_test_durations.py | |
| rm -rf test-durations-* | |
| - name: Create Pull Request to push consolidated test durations | |
| uses: peter-evans/create-pull-request@v7 | |
| with: | |
| token: ${{ secrets.ACTION_SECRET }} | |
| commit-message: update test durations | |
| title: Update test durations file | |
| body: Auto update test durations file | |
| branch: update-test-durations | |
| delete-branch: true | |
| base: main | |
| coverage: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install Coverage | |
| run: | | |
| python -m pip install coverage[toml] | |
| - name: Download coverage artifacts | |
| continue-on-error: true | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-* | |
| - name: Run coverage | |
| continue-on-error: true | |
| run: | | |
| coverage combine coverage*/.coverage* | |
| coverage report --show-missing | |
| docs: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} # enables conda/mamba env activation by reading bash profile | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| - name: Create mamba environment | |
| run: | | |
| micromamba create -n autoplex_docs python=3.10 --yes | |
| - name: Install uv | |
| run: micromamba run -n autoplex_docs pip install uv | |
| - name: Install autoplex and dependencies | |
| run: | | |
| micromamba activate autoplex_docs | |
| uv pip install --upgrade pip | |
| uv pip install --prerelease=allow .[docs,strict] | |
| - name: Build | |
| run: micromamba run -n autoplex_docs sphinx-build -W docs _build |