Build an iterative phonon flow #868
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| # This workflow will install Python dependencies, run tests and lint with Python 3.10 and 3.11 | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Testing Linux | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| split: [1, 2, 3, 4, 5] # Number of splits | |
| steps: | |
| - name: Fetch Most Recent Docker Image Tag | |
| run: | | |
| TAG=$(curl -H "Accept: application/vnd.github.v3+json" \ | |
| -H "Authorization: token ${{ secrets.GITHUB_TOKEN }}" \ | |
| https://api.github.com/orgs/autoatml/packages/container/autoplex%2Fautoplex-python-3.10/versions \ | |
| | jq -r 'sort_by(.created_at) | reverse | .[0].metadata.container.tags[0]') | |
| echo "VERSION=$TAG" >> $GITHUB_ENV | |
| - uses: actions/checkout@v4 | |
| - name: Run tests using Docker image for Python ${{ matrix.python-version }} | |
| run: | | |
| docker pull ghcr.io/autoatml/autoplex/autoplex-python-${{ matrix.python-version }}:${{ env.VERSION }} | |
| docker run --rm \ | |
| -v ${{ github.workspace }}:/workspace \ | |
| -w /workspace \ | |
| ghcr.io/autoatml/autoplex/autoplex-python-${{ matrix.python-version }}:${{ env.VERSION }} \ | |
| bash -c " | |
| python -m pip install --upgrade pip && \ | |
| python -m uv cache clean | |
| python -m uv pip install --prerelease=allow .[strict,tests] && \ | |
| OMP_NUM_THREADS=1 pytest --cache-clear --cov=autoplex --cov-report term-missing --cov-append --splits 5 --group ${{ matrix.split }} -vv --durations-path /workspace/tests/test_data/.pytest-split-durations --store-durations | |
| " | |
| - name: Upload test durations artifact | |
| if: matrix.python-version == '3.10' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-durations-${{ matrix.python-version }}-${{ matrix.split }} | |
| include-hidden-files: true | |
| path: ./tests/test_data/.pytest-split-durations | |
| - name: Upload coverage | |
| if: matrix.python-version == '3.10' | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-${{ matrix.python-version }}-${{ matrix.split }} | |
| include-hidden-files: true | |
| path: ./.coverage | |
| commit-durations: | |
| if: github.repository_owner == 'autoatml' && github.ref == 'refs/heads/main' | |
| needs: build | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} # enables conda/mamba env activation by reading bash profile | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| - name: Create mamba environment | |
| run: | | |
| micromamba create -n autoplex_tests python=3.10 --yes | |
| - name: Install uv | |
| run: micromamba run -n autoplex_tests pip install uv | |
| - name: Install autoplex and dependencies | |
| run: | | |
| micromamba activate autoplex_tests | |
| uv pip install --upgrade pip | |
| uv pip install --prerelease=allow .[tests,strict] | |
| - name: Download test duration artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: test-durations-* | |
| - name: Compute average of test durations | |
| run: | | |
| micromamba activate autoplex_tests | |
| python3 .github/scripts/average_test_durations.py | |
| rm -rf test-durations-* | |
| - name: Create Pull Request to push consolidated test durations | |
| uses: peter-evans/create-pull-request@v7 | |
| with: | |
| token: ${{ secrets.ACTION_SECRET }} | |
| commit-message: update test durations | |
| title: Update test durations file | |
| body: Auto update test durations file | |
| branch: update-test-durations | |
| delete-branch: true | |
| base: main | |
| coverage: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install Coverage | |
| run: | | |
| python -m pip install coverage[toml] | |
| - name: Download coverage artifacts | |
| continue-on-error: true | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-* | |
| - name: Run coverage | |
| continue-on-error: true | |
| run: | | |
| coverage combine coverage*/.coverage* | |
| coverage report --show-missing | |
| docs: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} # enables conda/mamba env activation by reading bash profile | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Set up micromamba | |
| uses: mamba-org/setup-micromamba@main | |
| - name: Create mamba environment | |
| run: | | |
| micromamba create -n autoplex_docs python=3.10 --yes | |
| - name: Install uv | |
| run: micromamba run -n autoplex_docs pip install uv | |
| - name: Install autoplex and dependencies | |
| run: | | |
| micromamba activate autoplex_docs | |
| uv pip install --upgrade pip | |
| uv pip install --prerelease=allow .[docs,strict] | |
| - name: Build | |
| run: micromamba run -n autoplex_docs sphinx-build -W docs _build |