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Final transform module#691

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thibaultdvx wants to merge 47 commits intoaramis-lab:clinicadl_v2aramis-lab/clinicadl:clinicadl_v2from thibaultdvx:transforms_factorythibaultdvx/clinicadl:transforms_factoryCopy head branch name to clipboard

+2,527-7,543

Commits

Commits on Dec 9, 2024

• first draft fow new extraction objects

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  committed
  559040e

Commits on Dec 10, 2024

• unittests

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  committed
  3e7dc79

• replace mentions of BaseExtraction

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  016f61c

• fix typing issue with Self

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  6c5c81d

• update method calls in other modules

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  a8e458a

Commits on Dec 11, 2024

• add torchio subject support

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  810076b

• uniitest for torchio support

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  7e9209d

• remove slice_mode

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  8f1ba86

• add .clone()

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  7e711bc

• typo in docstring

  thibaultdvx

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  8bf0d54

Commits on Dec 12, 2024

• transform object

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  d74a307

• change 'elem' to 'sample'

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  4df6b40

• change eval() and train() so that they don't return anything

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  1f27840

• add label, mask and torchio subject support in dataset

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  5cf8933

Commits on Dec 16, 2024

• prepare-data and check_preprocessing out of caps dataset

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  5e319cd

• preprocessing

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  b579022

• change mention of BasePreprocessing to Preprocessing

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  bb858eb

• remove roi

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  6ad8d30

• init in unittests

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  7b258ca

• prepare-data outside caps_dataset

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  0f358af

• change unittest accordingly

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  c407d9f

Commits on Dec 17, 2024

• first augmentations

  thibaultdvx

  committed
  a8582d6

• Merge remote-tracking branch 'upstream/clinicadl_v2' into clinicadl_v2

  thibaultdvx

  committed
  034e4db

• Merge branch 'clinicadl_v2' into caps_dataset_transforms

  thibaultdvx

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  1f90670

• remove use_uncropped_image in DTI

  thibaultdvx

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  87059ec

• set use_uncropped_image to False

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  714e928

• check if tsv file exists before writting it

  thibaultdvx

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  30b340b

Commits on Dec 18, 2024

• modify transforms

  thibaultdvx

  committed
  61458a0

• Merge remote-tracking branch 'upstream/clinicadl_v2' into clinicadl_v2

  thibaultdvx

  committed
  e650b57

• Merge branch 'clinicadl_v2' into caps_dataset_transforms

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  bac2315

• complete merge

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  f431c7f

• use dictionnary

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  c3b8df9

• path issue

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  6566a9c

• path issue

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  2561274

• path issue

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  3a3e0dd

• Merge branch 'caps_dataset_transforms' into transforms_factory

  thibaultdvx

  committed
  8eef173

Commits on Dec 19, 2024

• first augmentations

  thibaultdvx

  committed
  a016181

• first draft for config classes

  thibaultdvx

  committed
  26545f9

• first draft factories

  thibaultdvx

  committed
  61369f6

Commits on Dec 23, 2024

• unittests

  thibaultdvx

  committed
  d00cf66

• Merge remote-tracking branch 'upstream/clinicadl_v2' into clinicadl_v2

  thibaultdvx

  committed
  d582774

• Merge branch 'clinicadl_v2' into transforms_factory

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  committed
  4b3fbe8

• last changes

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  committed
  45f17ae

Commits on Dec 27, 2024

• add new datapoint object

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  ac5a85d

• add Resample

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  902d7dc

• add ToCanonical

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  1711484

• solve axes issue

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  7be5872