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0.5.0

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@althonos althonos released this 28 May 10:47
· 11 commits to master since this release

Fixed

  • Exception messages not properly rendering with --traceback enabled.
  • Use os.cpu_count instead of multiprocessing.cpu_count where applicable.
  • Make BlockIterator zero-copy using indices instead of slices.

Changed

  • Use seqidlist to reduce number of blocks compared in backward search.
  • Switch to use BLASTdb v5 (instead of v4 previously).
  • Prefix temporary files with orthoani prefix.
  • Skip blocks containing more than 80% unknown nucleotides like in original implementation.
  • Average ANI values based on HSPs instead of reciprocical blocks like in original implementation.