Fix for merge script'

SystemsGenetics · Jul 13, 2024 · 9578e9f · 9578e9f
1 parent 78dc55b
commit 9578e9f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bin/merge_fastq.sh b/bin/merge_fastq.sh
@@ -16,7 +16,7 @@ if [ ${#files_1[@]} -gt 1 ] ; then
 
 elif [ ${#files_1[@]} -eq 1 ] ; then
 
-    ln ${files_1[0]} ${sample_id}_1.fastq
+    cp ${files_1[0]} ${sample_id}_1.fastq
 
 fi
 
@@ -29,6 +29,6 @@ if [ ${#files_2[@]} -gt 1 ] ; then
 
 elif [ ${#files_2[@]} -eq 1 ] ; then
 
-    ln ${files_2[0]} ${sample_id}_2.fastq
+    cp ${files_2[0]} ${sample_id}_2.fastq
 fi