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Merge pull request #703 from SheffieldML/devel
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Deploy the version 1.9.6
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zhenwendai authored Oct 31, 2018
2 parents ac41767 + b503c71 commit 9a25da8
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139 changes: 78 additions & 61 deletions CHANGELOG.md
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# Changelog

## v1.9.6 (2018-10-30)

## New

* Added a new class that enables using multiple likelihoods [@esiivola]

* Alex grig kalman new [@AlexGrig, @mzwiessele]

## Fix

* fix typo in docstring for GP.opimize() [@RobRomijnders]

* Updates to posterior sampling [@lawrennd]

* Jayanthkoushik cython fix [@jayanthkoushik, @mzwiessele]

* Added missing columns (:), fixed indentation [@vlavorini]

* Fix the bug in the prediction of full covariance matrix [@zhenwendai]

## v1.9.5 (2018-09-02)

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* Merge branch 'devel' into paramz. [mzwiessele]

Conflicts:
GPy/core/parameterization/parameter_core.py
GPy/testing/pickle_tests.py
GPy/core/parameterization/parameter_core.py
GPy/testing/pickle_tests.py

* [paramz] wrapping - todo: deprecation warnings. [mzwiessele]

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* Merge remote-tracking branch 'upstream/devel' into devel. [tjhgit]

Conflicts:
GPy/kern/__init__.py
GPy/kern/__init__.py

* Added spline kernel (from P. Hennig) to GPy. [tjhgit]

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* Integrated Laplace and merged Merge remote-tracking branch 'gpy_real/devel' into merge_branch. [Alan Saul]

Conflicts:
GPy/core/gp.py
GPy/likelihoods/__init__.py
GPy/likelihoods/likelihood_functions.py
GPy/likelihoods/link_functions.py
GPy/core/gp.py
GPy/likelihoods/__init__.py
GPy/likelihoods/likelihood_functions.py
GPy/likelihoods/link_functions.py

* Fixed white variance. [Alan Saul]

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* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele]

Conflicts:
GPy/inference/latent_function_inference/inferenceX.py
GPy/inference/latent_function_inference/inferenceX.py

* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Zhenwen Dai]

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* [dim red plots] plotting big models. [mzwiessele]

Conflicts:
GPy/plotting/matplot_dep/dim_reduction_plots.py
GPy/plotting/matplot_dep/dim_reduction_plots.py

* Add debug util module and try to debug sparsegp_mpi. [Zhenwen Dai]

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* [normalizer] first commit for normalizer in GPy. [mzwiessele]

Conflicts:
GPy/core/sparse_gp.py
GPy/models/bayesian_gplvm.py
GPy/core/sparse_gp.py
GPy/models/bayesian_gplvm.py

* Further bug fix for sparsegp_mpi. [Zhenwen Dai]

Expand All @@ -6227,8 +6246,8 @@
* [ard] enhanced ard handling and plotting. [mzwiessele]

Conflicts:
GPy/kern/_src/linear.py
GPy/models/ss_gplvm.py
GPy/kern/_src/linear.py
GPy/models/ss_gplvm.py

* [linear] einsums. [mzwiessele]

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* [inference] less constant jitter, and jitter adjustements. [mzwiessele]

Conflicts:
GPy/util/linalg.py
GPy/util/linalg.py

* Fixed a bug in optimize restarts: it now used optimizer_array. [James Hensman]

* [vardtc missing] logging. [maxz]

Conflicts:
GPy/inference/latent_function_inference/var_dtc.py
GPy/inference/latent_function_inference/var_dtc.py

* [init] normalization bugfix. [mzwiessele]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/kern/_src/kern.py
GPy/kern/_src/kern.py

* Missing file, import line commented. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/models/gp_classification.py
GPy/models/sparse_gp_classification.py
GPy/models/gp_classification.py
GPy/models/sparse_gp_classification.py

* New file. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/likelihoods/mixed_noise.py
GPy/likelihoods/mixed_noise.py

* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele]

Conflicts:
GPy/likelihoods/gaussian.py
GPy/likelihoods/gaussian.py

* Bug fix w.r.t. var_dtc.py. [Zhenwen Dai]

* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/inference/latent_function_inference/var_dtc.py
GPy/inference/latent_function_inference/var_dtc.py

* New model SparseGPCoregionalizedRegression. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/core/gp.py
GPy/plotting/matplot_dep/models_plots.py
GPy/core/gp.py
GPy/plotting/matplot_dep/models_plots.py

* GPCoregionalizedRegresssion added. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/kern/_src/constructors.py
GPy/kern/_src/constructors.py

* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/kern/kern.py
GPy/kern/parts/prod.py
GPy/kern/kern.py
GPy/kern/parts/prod.py

* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/kern/parts/prod.py
GPy/kern/parts/prod.py

* Minor changes. [Ricardo]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele]

Conflicts:
GPy/core/parameterization/param.py
GPy/core/parameterization/param.py

* Fixed a couple of small params bugs. [Alan Saul]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Max Zwiessele]

Conflicts:
GPy/core/parameterization/param.py
GPy/core/parameterization/parameter_core.py
GPy/core/parameterization/parameterized.py
GPy/core/parameterization/param.py
GPy/core/parameterization/parameter_core.py
GPy/core/parameterization/parameterized.py

* Stupid error, needed to actually USE the gradients in student t... Looks like s2 of rasm's may have an extra -? dW_df == -d2logpdf_df not just d2logpdf_df? [Alan Saul]

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* Merge branch 'params' of github.com:SheffieldML/GPy into params. [Ricardo]

Conflicts:
GPy/core/sparse_gp.py
GPy/core/sparse_gp.py

* Typo corrected. [Ricardo]

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* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]

Conflicts:
GPy/examples/classification.py
GPy/examples/classification.py

* Fixed a bug in Neil's otherwise tidy hetero kernel. [James Hensman]

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* Merge branch 'devel' into params. [Max Zwiessele]

Conflicts:
GPy/core/transformations.py
GPy/kern/parts/kernpart.py
GPy/core/transformations.py
GPy/kern/parts/kernpart.py

* Merge pull request #77 from jamesmcm/devel. [James McMurray]

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* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]

Conflicts:
GPy/examples/regression.py
GPy/kern/constructors.py
GPy/testing/kernel_tests.py
GPy/util/multioutput.py
GPy/examples/regression.py
GPy/kern/constructors.py
GPy/testing/kernel_tests.py
GPy/util/multioutput.py

* Other local changes. [Neil Lawrence]

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* Merge branch 'linK_functions2' into devel. [Ricardo]

Conflicts:
GPy/core/gp.py
GPy/core/gp_base.py
GPy/core/sparse_gp.py
GPy/examples/regression.py
GPy/kern/constructors.py
GPy/kern/parts/coregionalise.py
GPy/models/__init__.py
GPy/models/sparse_gp_classification.py
GPy/util/__init__.py
GPy/core/gp.py
GPy/core/gp_base.py
GPy/core/sparse_gp.py
GPy/examples/regression.py
GPy/kern/constructors.py
GPy/kern/parts/coregionalise.py
GPy/models/__init__.py
GPy/models/sparse_gp_classification.py
GPy/util/__init__.py

* Useless files deleted. [Ricardo]

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* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]

Conflicts:
GPy/core/fitc.py
GPy/core/fitc.py

* FITC example added. [Ricardo]

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* Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence]

Conflicts:
GPy/models/GPLVM.py
GPy/models/GPLVM.py

* Remove copies (they are now in visualize code ...). [Neil Lawrence]

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* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Ricardo]

Conflicts:
GPy/models/GP.py
GPy/models/GP.py

* Plot function got broken with last commit, this fixes it. [Ricardo]

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* Merge branch 'devel' of https://github.com/SheffieldML/GPy into devel. [Neil Lawrence]

Conflicts:
GPy/examples/dimensionality_reduction.py
GPy/examples/dimensionality_reduction.py

* Minor changes. [Neil Lawrence]

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* Merge branch 'devel' into new_constraints. [James Hensman]

Conflicts:
GPy/core/model.py
GPy/core/parameterised.py
GPy/core/model.py
GPy/core/parameterised.py

* Merge branch 'devel' of github.com:SheffieldML/GPy into devel. [Max Zwiessele]

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* Merge branch 'master' of github.com:SheffieldML/GPy. [Ricardo Andrade]

Conflicts:
GPy/examples/__init__.py
GPy/examples/__init__.py

* Working on psi cross terms. [Nicolo Fusi]

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* Merge branch 'newGP' [James Hensman]

Conflicts:
GPy/models/GP_regression.py
GPy/models/GP_regression.py

* Simplified the checkgrad logic somewhat. [James Hensman]

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* Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [James Hensman]

Conflicts:
GPy/likelihoods/EP.py
GPy/likelihoods/EP.py

* James' debugging of the EP/GP interface. [Ricardo Andrade]

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* Merge branch 'newGP' of github.com:SheffieldML/GPy into newGP. [Ricardo Andrade]

Conflicts:
GPy/likelihoods/EP.py
GPy/likelihoods/likelihood_functions.py
GPy/likelihoods/EP.py
GPy/likelihoods/likelihood_functions.py

* So many changes. [Ricardo Andrade]

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* Core file. [Nicolo Fusi]

* Initial commit. [Nicolò Fusi]


2 changes: 1 addition & 1 deletion GPy/__version__.py
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__version__ = "1.9.5"
__version__ = "1.9.6"
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