Code

Data augmentation#141

Code

Merged

sfmig merged 18 commits intomainSainsburyWellcomeCentre/crabs-exploration:mainfrom smg/data-augmSainsburyWellcomeCentre/crabs-exploration:smg/data-augmCopy head branch name to clipboardJun 28, 2024

+354-116

Commits

Commits on Jun 27, 2024

• Move checkpoint type computation to utils

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  12315cb

• Refactor checkpointing in training script

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  9d41ed4

• Get ckpt type if ckpt is passed

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  94361ab

• optionally apply a data augmentation method (WIP)

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  8e38530

• fix config syntax in code

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  27c2376

• add data augmentation notebook

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  21f4b4e

• notebook to explore params of individual transformations

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  4865cc6

• add transforms from config

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  42be084

• Add keywords to datamodule params

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  b2fdde8

• Optionally skip data augmentation

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  633c6c8

• If data augmentation key in config, apply

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  a4be766

• Update tests

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  ad406d7

• Change tests to read default config

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  3ad8420

• Refactor transform functions and clean up

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  6b1a723

• update notebook

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  3df8635

• Fix data augmentation default config

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  43f852b

• Optionally log data augmentation transforms as artifacts

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  5119bd1

• Rename skip to 'no_data_augmentation'

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  54e45b6