Fix pooch retrieval of file registry #1041
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - "*" | |
| tags: | |
| - "*" | |
| pull_request: | |
| jobs: | |
| linting: | |
| name: Run pre-commit linters | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/lint@v2 | |
| manifest: | |
| name: Check Manifest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: neuroinformatics-unit/actions/check_manifest@v2 | |
| test: | |
| name: Run tests on ${{ matrix.os }} py${{ matrix.python-version }} | |
| needs: [linting, manifest] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # Run all supported Python versions on linux | |
| os: [ubuntu-latest] | |
| python-version: ["3.9", "3.10"] | |
| # Include 1 Intel macos (13) and 1 M1 macos (latest) | |
| include: | |
| - os: macos-13 # intel macOS | |
| python-version: "3.10" | |
| - os: macos-latest # M1 macOS | |
| python-version: "3.10" | |
| steps: | |
| - name: Cache test data | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.crabs-exploration-test-data/* | |
| key: cached-test-data | |
| enableCrossOsArchive: true | |
| - name: Run all tests except marked slow (if macos-13) | |
| # this is because we observed macos-13 runners in CI | |
| # are sometimes x2 as slow as the others. See | |
| # https://github.com/actions/runner-images/issues/3885#issuecomment-1848423579 | |
| if: matrix.os == 'macos-13' | |
| uses: neuroinformatics-unit/actions/test@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| secret-codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
| tox-args: "-- -m 'not slow'" | |
| - name: Run all tests (if not macos-13) | |
| if: matrix.os != 'macos-13' | |
| uses: neuroinformatics-unit/actions/test@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| secret-codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
| build_sdist_wheels: | |
| name: Build source distribution | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'push' && github.ref_type == 'tag' | |
| steps: | |
| - uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 |