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@Sage-Bionetworks-Workflows

Sage-Bionetworks-Workflows

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  1. nextflow-infra nextflow-infra Public

    AWS CloudFormation templates for deploying Nextflow infrastructure

    Python 3 24

  2. py-orca py-orca Public

    Python package for connecting services and building data pipelines

    Python 5 1

  3. orca-recipes orca-recipes Public

    Open-source airflow deployment and production DAGs for the DPE team

    Python

  4. py-dcqc py-dcqc Public

    Python package for performing quality control (QC) for data coordination (DC)

    Python 3 3

  5. nf-synapse-challenge nf-synapse-challenge Public

    Forked from Sage-Bionetworks-Workflows/nf-dynamic-challenge

    Flexible framework for submission evaluation for challenges run on Synapse

    Python 5 2

  6. nf-synapse nf-synapse Public

    Centralized Repository for Synapse Operations in Nextflow

    Nextflow 2 1

Repositories

Showing 10 of 56 repositories
  • nextflow-infra Public

    AWS CloudFormation templates for deploying Nextflow infrastructure

    Sage-Bionetworks-Workflows/nextflow-infra’s past year of commit activity
    Python 3 Apache-2.0 24 0 3 Updated Jan 3, 2025
  • eks-stack Public

    Kubernetes stack deployed to AWS EKS managed by OpenTofu & Spacelift

    Sage-Bionetworks-Workflows/eks-stack’s past year of commit activity
    HCL 4 1 0 1 Updated Dec 26, 2024
  • nf-cwl-wrap Public

    Nextflow wrapper for CWL workflows. Intended to enable CWL workflows to be automated to run on Tower

    Sage-Bionetworks-Workflows/nf-cwl-wrap’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Dec 20, 2024
  • dpe-agents Public

    This is a repository for storing configurations for custom AWS Bedrock/Synapse chat agent configurations

    Sage-Bionetworks-Workflows/dpe-agents’s past year of commit activity
    0 Apache-2.0 0 0 0 Updated Dec 19, 2024
  • nf-genie Public

    Nextflow workflow for main GENIE processing

    Sage-Bionetworks-Workflows/nf-genie’s past year of commit activity
    Groovy 3 Apache-2.0 1 0 0 Updated Dec 13, 2024
  • nf-synapse Public

    Centralized Repository for Synapse Operations in Nextflow

    Sage-Bionetworks-Workflows/nf-synapse’s past year of commit activity
    Nextflow 2 Apache-2.0 1 1 0 Updated Dec 6, 2024
  • nf-agora Public

    Nextflow workflow for agora-data-tools data processing

    Sage-Bionetworks-Workflows/nf-agora’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 6, 2024
  • orca-recipes Public

    Open-source airflow deployment and production DAGs for the DPE team

    Sage-Bionetworks-Workflows/orca-recipes’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 31, 2024
  • py-orca Public

    Python package for connecting services and building data pipelines

    Sage-Bionetworks-Workflows/py-orca’s past year of commit activity
    Python 5 Apache-2.0 1 0 0 Updated Oct 31, 2024
  • py-dcqc Public

    Python package for performing quality control (QC) for data coordination (DC)

    Sage-Bionetworks-Workflows/py-dcqc’s past year of commit activity
    Python 3 Apache-2.0 3 1 0 Updated Aug 12, 2024
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