Make Galaxy to CWL workflow conversion optional #386

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Python package

	on:
	push:
	branches:
	- master
	- dev
	- windows
	pull_request:
	branches:
	- master
	- dev

	jobs:
	build:
	strategy:
	matrix:
	os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
	python-version: ['3.9', '3.10', '3.11', '3.12']

	runs-on: ${{ matrix.os }}

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -e .
	pip install flake8 pytest
	- name: Lint with flake8
	run: \|
	flake8 -v .
	- name: Test
	run: \|
	pytest -v test
	check-ga2cwl:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.12
	uses: actions/setup-python@v5
	with:
	python-version: '3.12'
	- name: Install
	run: \|
	python -m pip install --upgrade pip
	pip install -e .[ga2cwl]
	pip install pytest
	- name: Test
	run: \|
	pytest -v test

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