Allow an arbitrary mask to be used in the self attention #15925
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Jenkinsfile.monai-premerge | |
| name: premerge-min | |
| on: | |
| # quick tests for pull requests and the releasing branches | |
| push: | |
| branches: | |
| - dev | |
| - main | |
| - releasing/* | |
| pull_request: | |
| head_ref-ignore: | |
| - dev | |
| concurrency: | |
| # automatically cancel the previously triggered workflows when there's a newer version | |
| group: build-min-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # caching of these jobs: | |
| # - docker-py3-pip- (shared) | |
| # - ubuntu py37 pip- | |
| # - os-latest-pip- (shared) | |
| min-dep-os: # min dependencies installed tests for different OS | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest, macOS-latest, ubuntu-latest] | |
| timeout-minutes: 40 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Prepare pip wheel | |
| run: | | |
| which python | |
| python -m pip install --upgrade pip wheel | |
| - name: cache weekly timestamp | |
| id: pip-cache | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: cache for pip | |
| uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ${{ matrix.os }}-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install the dependencies | |
| run: | | |
| # min. requirements | |
| python -m pip install torch --index-url https://download.pytorch.org/whl/cpu | |
| python -m pip install -r requirements-min.txt | |
| python -m pip list | |
| BUILD_MONAI=0 python setup.py develop # no compile of extensions | |
| shell: bash | |
| - name: Run quick tests (CPU ${{ runner.os }}) | |
| run: | | |
| python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
| python -c "import monai; monai.config.print_config()" | |
| ./runtests.sh --min | |
| shell: bash | |
| env: | |
| QUICKTEST: True | |
| NGC_API_KEY: ${{ secrets.NGC_API_KEY }} | |
| NGC_ORG: ${{ secrets.NGC_ORG }} | |
| NGC_TEAM: ${{ secrets.NGC_TEAM }} | |
| min-dep-py3: # min dependencies installed tests for different python | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| timeout-minutes: 40 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Prepare pip wheel | |
| run: | | |
| which python | |
| python -m pip install --user --upgrade pip setuptools wheel | |
| - name: cache weekly timestamp | |
| id: pip-cache | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: cache for pip | |
| uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install the dependencies | |
| run: | | |
| # min. requirements | |
| python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu | |
| python -m pip install -r requirements-min.txt | |
| python -m pip list | |
| BUILD_MONAI=0 python setup.py develop # no compile of extensions | |
| shell: bash | |
| - name: Run quick tests (CPU ${{ runner.os }}) | |
| run: | | |
| python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
| python -c "import monai; monai.config.print_config()" | |
| ./runtests.sh --min | |
| env: | |
| QUICKTEST: True | |
| NGC_API_KEY: ${{ secrets.NGC_API_KEY }} | |
| NGC_ORG: ${{ secrets.NGC_ORG }} | |
| NGC_TEAM: ${{ secrets.NGC_TEAM }} | |
| min-dep-pytorch: # min dependencies installed tests for different pytorch | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| pytorch-version: ['1.10.2', '1.11.0', '1.12.1', '1.13', '2.0.1', 'latest'] | |
| timeout-minutes: 40 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Prepare pip wheel | |
| run: | | |
| which python | |
| python -m pip install --user --upgrade pip setuptools wheel | |
| - name: cache weekly timestamp | |
| id: pip-cache | |
| run: | | |
| echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
| echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: cache for pip | |
| uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }} | |
| - name: Install the dependencies | |
| run: | | |
| # min. requirements | |
| if [ ${{ matrix.pytorch-version }} == "latest" ]; then | |
| python -m pip install torch | |
| else | |
| python -m pip install torch==${{ matrix.pytorch-version }} | |
| fi | |
| python -m pip install -r requirements-min.txt | |
| python -m pip list | |
| BUILD_MONAI=0 python setup.py develop # no compile of extensions | |
| shell: bash | |
| - name: Run quick tests (pytorch ${{ matrix.pytorch-version }}) | |
| run: | | |
| python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
| python -c "import monai; monai.config.print_config()" | |
| ./runtests.sh --min | |
| env: | |
| QUICKTEST: True | |
| NGC_API_KEY: ${{ secrets.NGC_API_KEY }} | |
| NGC_ORG: ${{ secrets.NGC_ORG }} | |
| NGC_TEAM: ${{ secrets.NGC_TEAM }} |