Fix cache failure in Github Actions caused by setup-python

.github/workflows/automated-dev-tests.yml

@@ -46,8 +46,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
       - name: Setup workspace
@@ -132,8 +131,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
       - name: Setup workspace
@@ -178,8 +176,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev  # gcovr
@@ -232,8 +229,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -270,8 +266,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -308,8 +303,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -348,8 +342,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev
       - name: Setup workspace
@@ -410,8 +403,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -466,8 +458,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -525,8 +516,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3" vtk
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -573,8 +563,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -626,8 +615,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -676,8 +664,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -726,8 +713,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -776,8 +762,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -826,8 +811,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -876,8 +860,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev
@@ -926,8 +909,7 @@ jobs:
           cache: 'pip'
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install numpy "Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3"
+          pip install -r requirements.txt
           sudo apt-get update -y
           sudo apt-get install -y libopenblas-dev libopenblas-openmp-dev
           sudo apt-get install -y libhdf5-dev libopenmpi-dev libyaml-cpp-dev

requirements.txt

@@ -0,0 +1,4 @@
+# Python dependencies used for testing
+numpy 
+vtk
+Bokeh>=2.4,!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3