Table of Contents
Source code of the bachelor thesis "Analyzing the Relationship Between Enzyme Turnover Numbers and Metabolic Fluxes Predicted by Flux Balance Analyses".
To set up this project locally follow these steps. Python version 3.8 was used for this project.
Used packages:
- pandas==1.14
- cobra==0.22.1
- bio==1.3.4
- ete3==3.1.2
- matplotlib==3.1.1
- scipy==1.4.1
- requests==2.25.1
- Clone the repo
git clone https://github.com/Nina181/kcat_flux_relationship
- Install packages
pip install <package_name>
- Update NCBI Database (only necessary for first use)
uncomment line 93 in method add_lineage() of the class kcat_flux_mapping.mapping
- Enter your email address necessary for accessing the NCBI Database
in method add_lineage() line 94 of the class kcat_flux_mapping.mapping
generated minimal environments and predicted fluxes were saved in pickle files. These files were to large to upload and are provided upon request.