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Update linux.md
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add user specific installation
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stebo85 authored Oct 23, 2023
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14 changes: 12 additions & 2 deletions content/en/docs/Getting Started/Neurocommand/linux.md
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Expand Up @@ -15,8 +15,6 @@ description: >
- python 3.6+ [https://docs.conda.io/en/latest/miniconda.html#linux-installers](https://docs.conda.io/en/latest/miniconda.html#linux-installers)
- singularity [https://docs.sylabs.io/guides/3.5/user-guide/quick_start.html](https://docs.sylabs.io/guides/3.5/user-guide/quick_start.html)
- git

### Optional
- lmod [https://lmod.readthedocs.io/en/latest/](https://lmod.readthedocs.io/en/latest/)

### command line mode (e.g. running on an HPC or CVL)
Expand Down Expand Up @@ -61,6 +59,18 @@ _Creates symlinks to menu files in installation dir_
`sudo bash uninstall.sh` to uninstall
_Removes symlinks_

### For user-specific desktop menus in a shared Linux environment
```
mkdir -p $HOME/.config/menus
mkdir -p $HOME/.local/share/applications
mkdir -p $HOME/.local/share/desktop-directories
ln -sfn /PATH_TO_YOUR_INSTALLATION/neurocommand/local/xfce-applications.menu $HOME/.config/menus
ln -sfn /PATH_TO_YOUR_INSTALLATION/neurocommand/local/neurodesk-applications.menu $HOME/.config/menus
ln -sfn /PATH_TO_YOUR_INSTALLATION/neurocommand/local/applications $HOME/.local/share/applications/neurodesk
ln -sfn /PATH_TO_YOUR_INSTALLATION/neurocommand/local/desktop-directories $HOME/.local/share/desktop-directories/neurodesk
```


## To update
Run `git pull`
Run `bash build.sh` # this updates the neurocommand but not the modules
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