-
Notifications
You must be signed in to change notification settings - Fork 28
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
1 changed file
with
6 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -8,7 +8,7 @@ description: > | |
|
||
|
||
<!-- markdown-link-check-disable --> | ||
Neurodesk is already installed at UQ's Bunya supercomputer. To access neurodesk tools you need to be in an interactive job (so either start a virtual desktop via Open On-Demand: https://bunya-ondemand.rcc.uq.edu.au/pun/sys/dashboard) or run: | ||
Neurodesk is installed at the University of Queensland's supercomputer "Bunya". To access neurodesk tools you need to be in an interactive job (so either start a virtual desktop via Open On-Demand: https://bunya-ondemand.rcc.uq.edu.au/pun/sys/dashboard) or run: | ||
``` | ||
salloc --nodes=1 --ntasks-per-node=1 --cpus-per-task=1 --mem=5G --job-name=TinyInteractive --time=01:00:00 --partition=debug --account=REPLACE_THIS_WITH_YOUR_AccountString srun --export=PATH,TERM,HOME,LANG --pty /bin/bash -l | ||
``` | ||
|
@@ -35,4 +35,9 @@ If you want to use GUI applications (fsleyes, afni, suma, ...) you need to overw | |
export TMPDIR=/tmp | ||
``` | ||
|
||
NOTE: MRIQC has its $HOME variable hardcoded to be /home/mriqc. This leads to problems on Bunya. A workaround is to run this before mriqc: | ||
``` | ||
export neurodesk_singularity_opts="--home $HOME:/home" | ||
``` | ||
|
||
If you are missing an application, please contact [email protected] and ask for the neurodesk installation to be updated on Bunya :) |