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add run screenshot
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korbinian90 authored and stebo85 committed Oct 16, 2023
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10 changes: 8 additions & 2 deletions content/en/tutorials-examples/tutorials/spectroscopy/mrsiproc.md
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Expand Up @@ -39,13 +39,13 @@ bash Part2_EvaluateMRSI.sh [ARGUMENTS]

After starting Neurodesk, a JupyterLab instance should open. You can either work from here or open a desktop environment by clicking `Neurodesktop` under `Notebooks`. This tutorial uses the desktop.

![JupyterLab](../../../../../static/tutorials-examples/tutorials/spectroscopy/mrsiproc/jupyterlab.png 'JupyterLab')
![JupyterLab](/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/jupyterlab.png 'JupyterLab')

## Running MRSI reconstruction

Open vscode and create and open a new folder under `neurodesktop-storage`

![Open Folder](../../../../../static/tutorials-examples/tutorials/spectroscopy/mrsiproc/open_folder.png 'Open Folder')
![Open Folder](/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/open_folder.png 'Open Folder')

{{< alert title="Info" >}}

Expand Down Expand Up @@ -152,7 +152,13 @@ Then run the script with
bash run_mrsi_part1.sh
```

![Run MRSI](/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/run_mrsi.png 'Run MRSI')

This can take several hours for reconstruction and LCModel processing.

## Part 2

Continue with the same process for part 2
Template file for part 2

```
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