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NeuroDesk · Dec 9, 2024 · d3a9d78 · d3a9d78
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diff --git a/_sources/diffusion_imaging/MRtrix_Preprocessing.ipynb b/_sources/diffusion_imaging/MRtrix_Preprocessing.ipynb
@@ -405,7 +405,7 @@
     }
    ],
    "source": [
-    "! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval"
+    "! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz ds001226/sub-CON02/ses-preop/dwi/sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval"
    ]
   },
   {

diff --git a/diffusion_imaging/MRtrix_Preprocessing.html b/diffusion_imaging/MRtrix_Preprocessing.html
@@ -783,7 +783,7 @@ <h2>Looking at the Data<a class="headerlink" href="#looking-at-the-data" title="
 </div>
 <div class="cell docutils container">
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-<div class="highlight-ipython3 notranslate"><div class="highlight"><pre><span></span><span class="o">!</span><span class="w"> </span>mrconvert<span class="w"> </span>sub-CON02_ses-preop_acq-AP_dwi.nii.gz<span class="w"> </span>sub-02_dwi.mif<span class="w"> </span>-fslgrad<span class="w"> </span>sub-CON02_ses-preop_acq-AP_dwi.bvec<span class="w"> </span>sub-CON02_ses-preop_acq-AP_dwi.bval
+<div class="highlight-ipython3 notranslate"><div class="highlight"><pre><span></span><span class="o">!</span><span class="w"> </span>mrconvert<span class="w"> </span>sub-CON02_ses-preop_acq-AP_dwi.nii.gz<span class="w"> </span>ds001226/sub-CON02/ses-preop/dwi/sub-02_dwi.mif<span class="w"> </span>-fslgrad<span class="w"> </span>sub-CON02_ses-preop_acq-AP_dwi.bvec<span class="w"> </span>sub-CON02_ses-preop_acq-AP_dwi.bval
 </pre></div>
 </div>
 </div>
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@@ Expand Up / @@ -405,7 +405,7 @@ @@
         }
        ],
        "source": [
-        "! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval"
+        "! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz ds001226/sub-CON02/ses-preop/dwi/sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval"
        ]
       },
       {
@@ Expand Down @@