update toc for new notebooks

README.md

@@ -11,7 +11,7 @@ If you're planning to create a new example notebook, please follow these steps:
 
 2. Create a New Notebook: Make sure your notebook runs as expected. This includes sections for the introduction, data preparation, analysis, results.
 
-3. Add an entry to table of content: Once your pull request is merged, you can add an entry to the `books/_toc.yml` file. This will add your notebook to the table of contents on the main page.
+3. Add an entry to table of content: To have your notebook rendered, you need to add an entry to the `books/_toc.yml` file. This will add your notebook to the table of contents on the main page.
 
 4. Save and Submit: Once you're done, save your notebook and submit it for review. You can do this by creating a pull request on our GitHub repository. 
 

books/_toc.yml

@@ -23,4 +23,8 @@ parts:
     chapters:
       - file: functional_imaging/nipype_fsl_all_levels_flanker
       - file: functional_imaging/fmriprep_example
+      - file: functional_imaging/first_and_second_level_spm
 
+  - caption: "Workflow"
+    chapters:
+      - file: workflows/Nipype_on_NeuroDesk_RISE

books/functional_imaging/first_and_second_level_spm.ipynb

@@ -846,17 +846,9 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": null,
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "stty: 'standard input': Inappropriate ioctl for device\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "# Level1Design - Generates an SPM design matrix\n",
     "level1design = Node(spm.Level1Design(bases={'hrf':{'derivs': [0,0]}}, # no derivatives\n",

books/workflows/Nipype_on_NeuroDesk_RISE.ipynb

@@ -3336,7 +3336,7 @@
  "metadata": {
   "celltoolbar": "Slideshow",
   "kernelspec": {
-   "display_name": "Python [conda env:root] *",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },