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deploy: 0c6db22
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iishiishii committed Nov 20, 2024
1 parent 367aa11 commit 345f231
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Showing 79 changed files with 5,095 additions and 7,841 deletions.
2 changes: 1 addition & 1 deletion .buildinfo
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: cef748324aa5b2fd24d41b95638eb116
config: 24b486483a2e91ba46e81de60bca9833
tags: 645f666f9bcd5a90fca523b33c5a78b7
1 change: 0 additions & 1 deletion _sources/diffusion_imaging/mrtrix3tissue.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -119,7 +119,6 @@
"# load fmriprep\n",
"import lmod\n",
"import os\n",
"# await lmod.load('mrtrix3/3.0.4')\n",
"await lmod.load('mrtrix3tissue/5.2.8')\n",
"await lmod.list()"
]
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104 changes: 89 additions & 15 deletions _sphinx_design_static/design-tabs.js
Original file line number Diff line number Diff line change
@@ -1,27 +1,101 @@
var sd_labels_by_text = {};
// @ts-check

// Extra JS capability for selected tabs to be synced
// The selection is stored in local storage so that it persists across page loads.

/**
* @type {Record<string, HTMLElement[]>}
*/
let sd_id_to_elements = {};
const storageKeyPrefix = "sphinx-design-tab-id-";

/**
* Create a key for a tab element.
* @param {HTMLElement} el - The tab element.
* @returns {[string, string, string] | null} - The key.
*
*/
function create_key(el) {
let syncId = el.getAttribute("data-sync-id");
let syncGroup = el.getAttribute("data-sync-group");
if (!syncId || !syncGroup) return null;
return [syncGroup, syncId, syncGroup + "--" + syncId];
}

/**
* Initialize the tab selection.
*
*/
function ready() {
const li = document.getElementsByClassName("sd-tab-label");
for (const label of li) {
syncId = label.getAttribute("data-sync-id");
if (syncId) {
label.onclick = onLabelClick;
if (!sd_labels_by_text[syncId]) {
sd_labels_by_text[syncId] = [];
// Find all tabs with sync data

/** @type {string[]} */
let groups = [];

document.querySelectorAll(".sd-tab-label").forEach((label) => {
if (label instanceof HTMLElement) {
let data = create_key(label);
if (data) {
let [group, id, key] = data;

// add click event listener
// @ts-ignore
label.onclick = onSDLabelClick;

// store map of key to elements
if (!sd_id_to_elements[key]) {
sd_id_to_elements[key] = [];
}
sd_id_to_elements[key].push(label);

if (groups.indexOf(group) === -1) {
groups.push(group);
// Check if a specific tab has been selected via URL parameter
const tabParam = new URLSearchParams(window.location.search).get(
group
);
if (tabParam) {
console.log(
"sphinx-design: Selecting tab id for group '" +
group +
"' from URL parameter: " +
tabParam
);
window.sessionStorage.setItem(storageKeyPrefix + group, tabParam);
}
}

// Check is a specific tab has been selected previously
let previousId = window.sessionStorage.getItem(
storageKeyPrefix + group
);
if (previousId === id) {
// console.log(
// "sphinx-design: Selecting tab from session storage: " + id
// );
// @ts-ignore
label.previousElementSibling.checked = true;
}
}
sd_labels_by_text[syncId].push(label);
}
}
});
}

function onLabelClick() {
// Activate other inputs with the same sync id.
syncId = this.getAttribute("data-sync-id");
for (label of sd_labels_by_text[syncId]) {
/**
* Activate other tabs with the same sync id.
*
* @this {HTMLElement} - The element that was clicked.
*/
function onSDLabelClick() {
let data = create_key(this);
if (!data) return;
let [group, id, key] = data;
for (const label of sd_id_to_elements[key]) {
if (label === this) continue;
// @ts-ignore
label.previousElementSibling.checked = true;
}
window.localStorage.setItem("sphinx-design-last-tab", syncId);
window.sessionStorage.setItem(storageKeyPrefix + group, id);
}

document.addEventListener("DOMContentLoaded", ready, false);
65 changes: 31 additions & 34 deletions _static/basic.css
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
*
* Sphinx stylesheet -- basic theme.
*
* :copyright: Copyright 2007-2022 by the Sphinx team, see AUTHORS.
* :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
* :license: BSD, see LICENSE for details.
*
*/
Expand Down Expand Up @@ -236,17 +236,11 @@ div.body p, div.body dd, div.body li, div.body blockquote {
a.headerlink {
visibility: hidden;
}
a.brackets:before,
span.brackets > a:before{
content: "[";
}

a.brackets:after,
span.brackets > a:after {
content: "]";
a:visited {
color: #551A8B;
}


h1:hover > a.headerlink,
h2:hover > a.headerlink,
h3:hover > a.headerlink,
Expand Down Expand Up @@ -334,11 +328,17 @@ aside.sidebar {
p.sidebar-title {
font-weight: bold;
}

nav.contents,
aside.topic,
div.admonition, div.topic, blockquote {
clear: left;
}

/* -- topics ---------------------------------------------------------------- */

nav.contents,
aside.topic,
div.topic {
border: 1px solid #ccc;
padding: 7px;
Expand Down Expand Up @@ -377,13 +377,17 @@ div.body p.centered {

div.sidebar > :last-child,
aside.sidebar > :last-child,
nav.contents > :last-child,
aside.topic > :last-child,
div.topic > :last-child,
div.admonition > :last-child {
margin-bottom: 0;
}

div.sidebar::after,
aside.sidebar::after,
nav.contents::after,
aside.topic::after,
div.topic::after,
div.admonition::after,
blockquote::after {
Expand Down Expand Up @@ -609,25 +613,6 @@ ul.simple p {
margin-bottom: 0;
}

/* Docutils 0.17 and older (footnotes & citations) */
dl.footnote > dt,
dl.citation > dt {
float: left;
margin-right: 0.5em;
}

dl.footnote > dd,
dl.citation > dd {
margin-bottom: 0em;
}

dl.footnote > dd:after,
dl.citation > dd:after {
content: "";
clear: both;
}

/* Docutils 0.18+ (footnotes & citations) */
aside.footnote > span,
div.citation > span {
float: left;
Expand All @@ -652,8 +637,6 @@ div.citation > p:last-of-type:after {
clear: both;
}

/* Footnotes & citations ends */

dl.field-list {
display: grid;
grid-template-columns: fit-content(30%) auto;
Expand All @@ -666,10 +649,6 @@ dl.field-list > dt {
padding-right: 5px;
}

dl.field-list > dt:after {
content: ":";
}

dl.field-list > dd {
padding-left: 0.5em;
margin-top: 0em;
Expand All @@ -695,6 +674,16 @@ dd {
margin-left: 30px;
}

.sig dd {
margin-top: 0px;
margin-bottom: 0px;
}

.sig dl {
margin-top: 0px;
margin-bottom: 0px;
}

dl > dd:last-child,
dl > dd:last-child > :last-child {
margin-bottom: 0;
Expand Down Expand Up @@ -763,6 +752,14 @@ abbr, acronym {
cursor: help;
}

.translated {
background-color: rgba(207, 255, 207, 0.2)
}

.untranslated {
background-color: rgba(255, 207, 207, 0.2)
}

/* -- code displays --------------------------------------------------------- */

pre {
Expand Down
104 changes: 89 additions & 15 deletions _static/design-tabs.js
Original file line number Diff line number Diff line change
@@ -1,27 +1,101 @@
var sd_labels_by_text = {};
// @ts-check

// Extra JS capability for selected tabs to be synced
// The selection is stored in local storage so that it persists across page loads.

/**
* @type {Record<string, HTMLElement[]>}
*/
let sd_id_to_elements = {};
const storageKeyPrefix = "sphinx-design-tab-id-";

/**
* Create a key for a tab element.
* @param {HTMLElement} el - The tab element.
* @returns {[string, string, string] | null} - The key.
*
*/
function create_key(el) {
let syncId = el.getAttribute("data-sync-id");
let syncGroup = el.getAttribute("data-sync-group");
if (!syncId || !syncGroup) return null;
return [syncGroup, syncId, syncGroup + "--" + syncId];
}

/**
* Initialize the tab selection.
*
*/
function ready() {
const li = document.getElementsByClassName("sd-tab-label");
for (const label of li) {
syncId = label.getAttribute("data-sync-id");
if (syncId) {
label.onclick = onLabelClick;
if (!sd_labels_by_text[syncId]) {
sd_labels_by_text[syncId] = [];
// Find all tabs with sync data

/** @type {string[]} */
let groups = [];

document.querySelectorAll(".sd-tab-label").forEach((label) => {
if (label instanceof HTMLElement) {
let data = create_key(label);
if (data) {
let [group, id, key] = data;

// add click event listener
// @ts-ignore
label.onclick = onSDLabelClick;

// store map of key to elements
if (!sd_id_to_elements[key]) {
sd_id_to_elements[key] = [];
}
sd_id_to_elements[key].push(label);

if (groups.indexOf(group) === -1) {
groups.push(group);
// Check if a specific tab has been selected via URL parameter
const tabParam = new URLSearchParams(window.location.search).get(
group
);
if (tabParam) {
console.log(
"sphinx-design: Selecting tab id for group '" +
group +
"' from URL parameter: " +
tabParam
);
window.sessionStorage.setItem(storageKeyPrefix + group, tabParam);
}
}

// Check is a specific tab has been selected previously
let previousId = window.sessionStorage.getItem(
storageKeyPrefix + group
);
if (previousId === id) {
// console.log(
// "sphinx-design: Selecting tab from session storage: " + id
// );
// @ts-ignore
label.previousElementSibling.checked = true;
}
}
sd_labels_by_text[syncId].push(label);
}
}
});
}

function onLabelClick() {
// Activate other inputs with the same sync id.
syncId = this.getAttribute("data-sync-id");
for (label of sd_labels_by_text[syncId]) {
/**
* Activate other tabs with the same sync id.
*
* @this {HTMLElement} - The element that was clicked.
*/
function onSDLabelClick() {
let data = create_key(this);
if (!data) return;
let [group, id, key] = data;
for (const label of sd_id_to_elements[key]) {
if (label === this) continue;
// @ts-ignore
label.previousElementSibling.checked = true;
}
window.localStorage.setItem("sphinx-design-last-tab", syncId);
window.sessionStorage.setItem(storageKeyPrefix + group, id);
}

document.addEventListener("DOMContentLoaded", ready, false);
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