Merge pull request #302 from jordanschnell/non_monotonic_csi_thresholds #762
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [main, develop] | |
| pull_request: | |
| branches: [main, develop] | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| monet: [cf, dev] | |
| fail-fast: false # always both | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python (micromamba) | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: docs/environment-docs.yml | |
| cache-environment: true | |
| create-args: >- | |
| pytest | |
| - if: ${{ matrix.monet == 'dev' }} | |
| name: Install development versions of monet and monetio | |
| run: | | |
| python -m pip list | grep monet | |
| python -m pip install --force-reinstall --no-deps https://github.com/noaa-oar-arl/monetio/archive/develop.zip | |
| python -m pip install --force-reinstall --no-deps https://github.com/noaa-oar-arl/monet/archive/develop.zip | |
| - name: Versions | |
| run: | | |
| which python | |
| python -m pip list | grep monet | |
| micromamba list | grep monet | |
| python -c "import monetio; print('monetio.__version__', getattr(monetio, '__version__', '?'))" | |
| python -c "import monet; print('monet.__version__', getattr(monet, '__version__', '?'))" | |
| - name: pytest | |
| run: python -m pytest -v -ra melodies_monet | |
| - name: Run docs/examples notebooks as scripts | |
| run: | | |
| cd docs/examples | |
| for f in *.ipynb; do | |
| if [ "$f" == 'idealized.ipynb' ]; then | |
| jupytext --to py $f -o t.py && python t.py || exit 1 | |
| fi | |
| done | |
| cd - | |
| - name: Prepare idealized save/read cases | |
| shell: python | |
| run: | | |
| from copy import deepcopy | |
| import yaml | |
| with open('docs/examples/control_idealized.yaml') as f: | |
| ctl = yaml.safe_load(f) | |
| assert {'save', 'read'} < ctl['analysis'].keys() | |
| ctl_save = deepcopy(ctl) | |
| del ctl_save['analysis']['read'] | |
| with open('docs/examples/control_idealized_save.yaml', 'w') as f: | |
| yaml.safe_dump(ctl_save, f) | |
| ctl_read = deepcopy(ctl) | |
| del ctl_read['analysis']['save'] | |
| with open('docs/examples/control_idealized_read.yaml', 'w') as f: | |
| yaml.safe_dump(ctl_read, f) | |
| - name: Check CLI works | |
| run: | | |
| cd docs/examples | |
| melodies-monet --version | |
| python -m melodies_monet --version | |
| melodies-monet run control_idealized_save.yaml | |
| melodies-monet run control_idealized_read.yaml | |
| cd - | |
| docs: | |
| name: Check docs build | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python (micromamba) | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: docs/environment-docs.yml | |
| cache-environment: true | |
| - name: linkcheck | |
| run: sphinx-build -b linkcheck docs docs/_build/linkcheck | |
| - name: sphinx-build -W | |
| run: sphinx-build -b html -W docs docs/_build/html | |
| - name: Check Sphinx failure log | |
| if: ${{ failure() }} | |
| run: | | |
| if [ -e /tmp/sphinx-err* ]; then | |
| for f in /tmp/sphinx-err*; do | |
| echo $f | |
| cat $f | |
| done | |
| fi | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check that .py files have the license header | |
| run: python3 ci/check-for-license-header.py |