revise tropomi modules for monetio updates #690
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| name: CI | |
| on: | |
| push: | |
| branches: [main, develop] | |
| pull_request: | |
| branches: [main, develop] | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| monet: [cf, dev] | |
| fail-fast: false # always both | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python (micromamba) | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: docs/environment-docs.yml | |
| cache-environment: true | |
| create-args: >- | |
| pytest | |
| - if: ${{ matrix.monet == 'dev' }} | |
| name: Install development versions of monet and monetio | |
| run: | | |
| python -m pip list | grep monet | |
| python -m pip install --force-reinstall --no-deps https://github.com/noaa-oar-arl/monetio/archive/develop.zip | |
| python -m pip install --force-reinstall --no-deps https://github.com/noaa-oar-arl/monet/archive/develop.zip | |
| - name: Versions | |
| run: | | |
| which python | |
| python -m pip list | grep monet | |
| micromamba list | grep monet | |
| python -c "import monetio; print('monetio.__version__', getattr(monetio, '__version__', '?'))" | |
| python -c "import monet; print('monet.__version__', getattr(monet, '__version__', '?'))" | |
| - name: pytest | |
| run: python -m pytest -v melodies_monet | |
| - name: Run docs/examples notebooks as scripts | |
| run: | | |
| cd docs/examples | |
| for f in *.ipynb; do | |
| if [ "$f" == 'idealized.ipynb' ]; then | |
| jupytext --to py $f -o t.py && python t.py || exit 1 | |
| fi | |
| done | |
| cd - | |
| - name: Prepare idealized save/read cases | |
| shell: python | |
| run: | | |
| from copy import deepcopy | |
| import yaml | |
| with open('docs/examples/control_idealized.yaml') as f: | |
| ctl = yaml.safe_load(f) | |
| assert {'save', 'read'} < ctl['analysis'].keys() | |
| ctl_save = deepcopy(ctl) | |
| del ctl_save['analysis']['read'] | |
| with open('docs/examples/control_idealized_save.yaml', 'w') as f: | |
| yaml.safe_dump(ctl_save, f) | |
| ctl_read = deepcopy(ctl) | |
| del ctl_read['analysis']['save'] | |
| with open('docs/examples/control_idealized_read.yaml', 'w') as f: | |
| yaml.safe_dump(ctl_read, f) | |
| - name: Check CLI works | |
| run: | | |
| cd docs/examples | |
| melodies-monet --version | |
| python -m melodies_monet --version | |
| melodies-monet run control_idealized_save.yaml | |
| melodies-monet run control_idealized_read.yaml | |
| cd - | |
| docs: | |
| name: Check docs build | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python (micromamba) | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: docs/environment-docs.yml | |
| cache-environment: true | |
| - name: linkcheck | |
| run: sphinx-build -b linkcheck docs docs/_build/linkcheck | |
| - name: sphinx-build -W | |
| run: sphinx-build -b html -W docs docs/_build/html | |
| - name: Check Sphinx failure log | |
| if: ${{ failure() }} | |
| run: | | |
| if [ -e /tmp/sphinx-err* ]; then | |
| for f in /tmp/sphinx-err*; do | |
| echo $f | |
| cat $f | |
| done | |
| fi | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Check that .py files have the license header | |
| run: python3 ci/check-for-license-header.py |