added formatting workflows for JSON and python

.github/workflows/music-box-interactive-folder/prettier.yml

@@ -0,0 +1,32 @@
+name: Auto format javascript code with prettier
+
+on:
+  push:
+    branches:
+      - main
+
+jobs:
+  prettier:
+    runs-on: ubuntu-latest
+    steps:
+
+      - name: Check out code
+        uses: actions/checkout@v3
+        with:
+          ref: ${{ github.head_ref }}
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Install packages
+        run: npm install
+
+      - name: Format code
+        run: npm run format
+
+      - name: Create Pull Request
+        uses: peter-evans/create-pull-request@v3
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: prettier action fixes
+          title: Fixes by prettier action
+          body: This is an auto-generated PR with fixes by prettier.
+          branch: prettier-patches

.github/workflows/music-box-interactive-folder/test.yml

@@ -0,0 +1,27 @@
+name: Run Tests
+
+on: 
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Check out repository code
+      uses: actions/checkout@v2
+
+    - name: Use Node.js
+      uses: actions/setup-node@v4
+      with:
+        node-version: 21
+
+    - name: Install dependencies
+      run: npm install
+
+    - name: Run tests
+      run: npm run test

.github/workflows/musica/clang_format.yml

@@ -0,0 +1,54 @@
+name: Clang-Format
+
+on:
+  push:
+    branches:
+      - main
+  workflow_dispatch:
+
+jobs:
+  format:
+    name: Run Clang-Format
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Install Clang-Format
+        run: sudo apt-get update && sudo apt-get install clang-format && clang-format --version
+
+      - name: Check out code, run clang format, push changes
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.head_ref }}
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Run clang-format
+        run: |
+          find include -type f \( -name '*.hpp' -or -name '*.h' \) -exec clang-format -i --style=file --verbose {} +
+          find src -type f \( -name '*.cpp' -or -name '*.c' \) -exec clang-format -i --style=file --verbose {} +
+
+      - name: Check for changes
+        id: check-changes
+        run: git diff --exit-code
+        continue-on-error: true
+
+      - name: Commit and push changes
+        # a failue of this step means changes were detected
+        if: steps.check-changes.outcome != 'success'
+        run: |
+          git config --global user.name "GitHub Actions"
+          git config --global user.email "[email protected]"
+          git commit -am "Auto-format code using Clang-Format" || echo "No changes to commit"
+
+      - name: Push changes to main-formatting branch
+        if: steps.check-changes.outcome != 'success'
+        run: git push origin HEAD:main-formatting
+
+      - name: Create Pull Request
+        if: steps.check-changes.outcome != 'success'
+        uses: peter-evans/create-pull-request@v6
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: "Auto-format code using Clang-Format"
+          title: "Auto-format code changes"
+          body: "This is an automated pull request to apply code formatting using Clang-Format."
+          branch: main-formatting

.github/workflows/musica/clang_tidy.yml

@@ -0,0 +1,59 @@
+name: Clang-Tidy
+
+on:
+  push:
+    branches:
+      - main
+  workflow_dispatch:
+
+jobs:
+  format:
+    name: Run clang-tidy
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Install clang-tidy
+        run: sudo apt-get update && sudo apt-get install clang-tidy && clang-tidy --version
+
+      - name: Check out code, run clang-tidy, push changes
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ github.head_ref }}
+          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Run clang-tidy
+        # Currently disabled
+        if: false
+        run: |
+          find include -type f \( -name '*.hpp' -or -name '*.h' \) -exec clang-tidy --config-file="./.clang-tidy" --fix-errors {} +
+          find src -type f \( -name '*.cpp' -or -name '*.c' \) ! -path 'src/test/*' -exec clang-tidy --config-file="./.clang-tidy" --fix-errors {} +
+          find python -type f \( -name '*.cpp' -or -name '*.c' \) -exec clang-tidy --config-file="./.clang-tidy" --fix-errors {} +
+
+        continue-on-error: true
+
+      - name: Check for changes
+        id: check-changes
+        run: git diff --exit-code
+        continue-on-error: true
+
+      - name: Commit and push changes
+        # a failue of this step means changes were detected
+        if: steps.check-changes.outcome != 'success'
+        run: |
+          git config --global user.name "GitHub Actions"
+          git config --global user.email "[email protected]"
+          git commit -am "Auto-format code using clang-tidy" || echo "No changes to commit"
+
+      - name: Push changes to clang-tidy-format branch
+        if: steps.check-changes.outcome != 'success'
+        run: git push origin HEAD:clang-tidy-format
+
+      - name: Create Pull Request
+        if: steps.check-changes.outcome != 'success'
+        uses: peter-evans/create-pull-request@v6
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: "Auto-format code using clang-tidy"
+          title: "Auto-format code changes"
+          body: "This is an automated pull request to apply code formatting using clang-tidy."
+          branch: clang-tidy-format

.github/workflows/musica/docker.yml

@@ -0,0 +1,61 @@
+name: Docker
+
+on: 
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  docker-build-and-test:
+    name: Build and Test - ${{ matrix.dockerfile }}
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest]
+        dockerfile:
+          - Dockerfile
+          - Dockerfile.memcheck
+          - Dockerfile.fortran-gcc
+          - Dockerfile.openmp
+          - Dockerfile.mpi
+          - Dockerfile.mpi_openmp
+          - Dockerfile.python
+          - Dockerfile.pip
+        build_type: [Release, Debug]
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Delete huge unnecessary tools folder
+        run: rm -rf /opt/hostedtoolcache
+
+      - name: Build Docker image
+        run: docker build -t musica -f docker/${{ matrix.dockerfile }} . --build-arg MUSICA_GIT_TAG=${{ github.sha }} --build-arg BUILD_TYPE=${{ matrix.build_type }}
+
+      - name: Run tests in container
+        if: matrix.dockerfile != 'Dockerfile.coverage' && matrix.dockerfile != 'Dockerfile.pip'
+        run: docker run --name test-container -t musica bash -c 'make test ARGS="--rerun-failed --output-on-failure -j8"'
+
+      - name: Run coverage tests in container
+        if: matrix.dockerfile == 'Dockerfile.coverage'
+        run: docker run --name test-container -t musica bash -c 'make coverage ARGS="--rerun-failed --output-on-failure -j8"'
+
+      - name: Copy coverage from container
+        if: matrix.dockerfile == 'Dockerfile.coverage'
+        run: docker cp test-container:build/coverage.info .
+
+      - name: Upload coverage report
+        if: matrix.dockerfile == 'Dockerfile.coverage'
+        uses: codecov/codecov-action@v3
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          files: coverage.info

.github/workflows/musica/fetch_content_integration.yml

@@ -0,0 +1,44 @@
+name: FetchContentIntegration
+
+on: 
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  docker-build-and-test:
+    name: Build and Test - ${{ matrix.dockerfile }}
+    runs-on: ubuntu-latest
+    env:
+      BRANCH_NAME: ${{ github.head_ref || github.ref_name }} 
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest]
+        dockerfile:
+          - Dockerfile.fortran-intel
+          - Dockerfile.fortran-gcc.integration
+          - Dockerfile.fortran-nvhpc
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
+      - name: Print branch name
+        run: echo "Branch name is $BRANCH_NAME"
+
+      - name: Delete huge unnecessary tools folder
+        run: rm -rf /opt/hostedtoolcache
+
+      - name: Build Docker image
+        run: docker build -t musica --build-arg MUSICA_GIT_TAG=${BRANCH_NAME} -f docker/${{ matrix.dockerfile }} .
+
+      - name: Run tests in container
+        run: docker run --name test-container -t musica bash -c 'make test ARGS="--rerun-failed --output-on-failure -j8"'