Bioconda install #11
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name: Bioconda install | |
on: | |
schedule: | |
- cron: '0 3 * * 1' | |
jobs: | |
install-linux: | |
runs-on: ubuntu-latest | |
strategy: | |
max-parallel: 5 | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.9 | |
- name: Add conda to system path | |
run: | | |
# $CONDA is an environment variable pointing to the root of the miniconda directory | |
echo $CONDA/bin >> $GITHUB_PATH | |
- name: Install dependencies | |
run: | | |
conda install -c bioconda biophi | |
- name: Run tests | |
run: | | |
biophi sapiens -h | |
biophi oasis -h | |
pip install pytest | |
make pytest |