indigo-dc.galaxycloud_docker

This role has been developed to be used in the Laniakea project in order to run the official Galaxy Docker containers and its flavours on a UBUNTU 20.04 Virtual Machine

Galaxy customization

• User administrator creation
• Galaxy brand customization
• Anonymous login disabled
• Allow user creation
• Allow user impersonation
• CVMFS customization (default: data.galaxyproject.org)

Requirements

This ansible role supports Ubuntu 20.04.

Minimum ansible version: 2.9.6.

Role Variables

Main variables

galaxy_instance_description: set galaxy brand, default = "ELIXIR-IT"

export_dir: directory hosting Galaxy database files and docker images, default ="/export"

galaxy_flavor: "<owner>/<docker>:<docker_flag>", set the Galaxy Docker container, default = "bgruening/galaxy-stable:20.05"

Galaxy admin user creation

GALAXY_ADMIN_PASSWORD: Galaxy administrator password.

GALAXY_ADMIN_API_KEY: Galaxy administrator API KEY.

GALAXY_ADMIN_EMAIL: Galaxy administrator email.

Role templates

mygalaxyenv.j2: env file with the environment variables needed to configure the Galaxy Docker.

Dependencies

geerlingguy.docker : install Docker engine and store the docker images inside the external volume (/export).

Example Playbook

- name: minimum playbook
  hosts: localhost
  roles:
    - { role: galaxycloud_docker }
  vars:
    GALAXY_ADMIN_EMAIL: "<your@email>"

License

Apache Licence v2

http://www.apache.org/licenses/LICENSE-2.0

Reference

Galaxy docker: https://github.com/bgruening/docker-galaxy-stable

Laniakea project documentation: https://laniakea.readthedocs.io/en/latest/

Official cvmfs documentation: http://cvmfs.readthedocs.io/en/stable/cpt-repo.html