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@LaborBerlin

Labor Berlin - Charité Vivantes GmbH

Clinical Plattform "Bioinformatics & Data Science"

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  1. varvis-download varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    JavaScript 1

  2. score-assemblies score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    Python 24 1

  3. ont-assembly-snake ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    Python 19 3

Repositories

Showing 10 of 21 repositories
  • bedrock-claude-chat Public Forked from aws-samples/bedrock-claude-chat

    AWS-native chatbot using Bedrock + Claude (+Mistral)

    LaborBerlin/bedrock-claude-chat’s past year of commit activity
    TypeScript 0 MIT-0 353 0 0 Updated Nov 28, 2024
  • varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    LaborBerlin/varvis-download’s past year of commit activity
    JavaScript 1 GPL-3.0 0 3 0 Updated Oct 18, 2024
  • chatgpt-mattermost-bot Public Forked from yGuy/chatgpt-mattermost-bot

    A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.

    LaborBerlin/chatgpt-mattermost-bot’s past year of commit activity
    TypeScript 0 MIT 51 0 0 Updated Oct 16, 2024
  • hum-exomiser-fork Public Forked from exomiser/Exomiser

    A Tool to Annotate and Prioritize Exome Variants

    LaborBerlin/hum-exomiser-fork’s past year of commit activity
    Java 1 AGPL-3.0 55 0 0 Updated Sep 20, 2024
  • hum-ngs-vntyper Public Forked from hassansaei/VNtyper

    A tool to genotype MUC1 coding VNTR in ADTKD

    LaborBerlin/hum-ngs-vntyper’s past year of commit activity
    Python 0 4 0 0 Updated May 31, 2024
  • LB-tbdb Public Forked from jodyphelan/tbdb

    Standard database for the TBProfiler tool

    LaborBerlin/LB-tbdb’s past year of commit activity
    Python 0 LGPL-3.0 18 0 0 Updated May 13, 2024
  • ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    LaborBerlin/ont-assembly-snake’s past year of commit activity
    Python 19 MIT 3 0 0 Updated Apr 23, 2024
  • score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    LaborBerlin/score-assemblies’s past year of commit activity
    Python 24 MIT 1 0 0 Updated Apr 5, 2024
  • hum-cubi-tk-fork Public Forked from bihealth/cubi-tk

    CUBI Tooling for SODAR, VarFish et al.

    LaborBerlin/hum-cubi-tk-fork’s past year of commit activity
    Python 0 MIT 6 0 1 Updated Mar 20, 2024
  • hum-varfish-annotator-fork Public Forked from varfish-org/varfish-annotator

    Annotate variants for import into VarFish server.

    LaborBerlin/hum-varfish-annotator-fork’s past year of commit activity
    Java 0 MIT 3 0 0 Updated Dec 1, 2023
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