CRAN RC 0.12.2 (#900)

* change indentation for function signature * don't use devel roxygen2 * update tests for change in starwars data in dplyr * update citation * Update pkgdown.yaml * needed for tests * clean newer lints * don't use starwars dataset which receives updates * better naming instead of reusing base object names * remove unnecessary keyword args in testthat calls * don't nest pipe * Update R-CMD-check.yaml * try easystats trick * Revert "try easystats trick" This reverts commit 94e27ed. * Update R-CMD-check.yaml * Update test-ggdotplotstats.R * update lintr * follow kebab-case for file naming * Apply automatic changes * use latest lme4 for Matrix updates * correct way to remove violin plot * bump Pandoc * regenerate snapshots * Apply automatic changes * Revert "regenerate snapshots" This reverts commit ea76cae. * Apply automatic changes * generate snaps for new file names * run workflows on r-release; bump Pandoc * update metadata * simplify extractors * bump roxygen2 version * use latest statsExpressions * bump patchwork * run on r-devel * run two more workflows on r-devel * bump version * Update R-CMD-check.yaml --------- Co-authored-by: IndrajeetPatil <[email protected]>
IndrajeetPatil · Jan 14, 2024 · 62ecd00 · 62ecd00
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -1,3 +1,4 @@
+.ls-lint.yml
 ^.*\.Rproj$
 ^.dev$
 ^.gitlab-ci\.yml$

diff --git a/.github/workflows/R-CMD-check-devel.yaml b/.github/workflows/R-CMD-check-devel.yaml
@@ -20,7 +20,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/R-CMD-check-hard.yaml b/.github/workflows/R-CMD-check-hard.yaml
@@ -27,7 +27,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/R-CMD-check-strict.yaml b/.github/workflows/R-CMD-check-strict.yaml
@@ -40,7 +40,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -27,11 +27,11 @@ jobs:
 
           #- { os: windows-latest, r: "devel" }
           - { os: windows-latest, r: "release" }
-          - { os: windows-latest, r: "oldrel-1" }
+          #- { os: windows-latest, r: "oldrel-1" }
 
           #- { os: ubuntu-latest, r: "devel" }
-          - { os: ubuntu-latest, r: "release" }
-          - { os: ubuntu-latest, r: "oldrel-1" }
+          #- { os: ubuntu-latest, r: "release" }
+          #- { os: ubuntu-latest, r: "oldrel-1" }
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
@@ -42,7 +42,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/check-link-rot.yaml b/.github/workflows/check-link-rot.yaml
@@ -21,7 +21,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/check-random-test-order.yaml b/.github/workflows/check-random-test-order.yaml
@@ -9,7 +9,7 @@ name: check-random-test-order
 
 jobs:
   check-random-test-order:
-    runs-on: ubuntu-latest
+    runs-on: macos-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
@@ -18,7 +18,7 @@ jobs:
 
       - uses: r-lib/actions/setup-r@v2
         with:
-          r-version: "release"
+          #r-version: "devel"
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2

diff --git a/.github/workflows/check-readme.yaml b/.github/workflows/check-readme.yaml
@@ -30,7 +30,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/check-spelling.yaml b/.github/workflows/check-spelling.yaml
@@ -21,7 +21,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/check-vignette-warnings.yaml b/.github/workflows/check-vignette-warnings.yaml
@@ -18,7 +18,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/pkgdown-no-suggests.yaml b/.github/workflows/pkgdown-no-suggests.yaml
@@ -25,7 +25,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -24,7 +24,7 @@ jobs:
 
       - uses: r-lib/actions/setup-pandoc@v2
         with:
-          pandoc-version: "3.1.9"
+          pandoc-version: "3.1.11"
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -48,7 +48,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@v4.4.3
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
         with:
           branch: gh-pages
           folder: docs
diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml
@@ -24,7 +24,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: "3.9"
           architecture: "x64"

diff --git a/.github/workflows/styler.yaml b/.github/workflows/styler.yaml
@@ -30,7 +30,7 @@ jobs:
             local::.
             r-lib/pkgapi
             r-lib/styler
-            r-lib/roxygen2
+            any::roxygen2
             anthonynorth/roxyglobals
           needs: |
             styler

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -10,7 +10,7 @@ name: test-coverage
 
 jobs:
   test-coverage:
-    runs-on: ubuntu-latest
+    runs-on: macos-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
@@ -19,6 +19,7 @@ jobs:
 
       - uses: r-lib/actions/setup-r@v2
         with:
+          #r-version: "devel"
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2

diff --git a/.lintr b/.lintr
@@ -1,9 +1,8 @@
-linters: linters_with_defaults(
+linters: all_linters(
     absolute_path_linter = NULL,
     assignment_linter = NULL,
     commented_code_linter = NULL,
     cyclocomp_linter(25L),
-    extraction_operator_linter = NULL,
     if_not_else_linter(exceptions = character(0L)),
     implicit_integer_linter = NULL,
     library_call_linter = NULL,
@@ -19,6 +18,5 @@ linters: linters_with_defaults(
     undesirable_function_linter = NULL,
     undesirable_operator_linter = NULL,
     unnecessary_concatenation_linter(allow_single_expression = FALSE),
-    unused_import_linter = NULL,
-    defaults = linters_with_tags(tags = NULL)
+    unused_import_linter = NULL
   )
diff --git a/.ls-lint.yml b/.ls-lint.yml
@@ -0,0 +1,2 @@
+ls:
+    .R: kebab-case