Changes to use scilpy pip

EmmaRenauld · Jan 16, 2024 · b646b42 · b646b42
1 parent c2a3221
commit b646b42
Show file tree

Hide file tree

Showing 3 changed files with 4 additions and 16 deletions.
diff --git a/dwi_ml/data/processing/streamlines/post_processing.py b/dwi_ml/data/processing/streamlines/post_processing.py
@@ -5,9 +5,10 @@
 import numpy as np
 import torch
 
-from scilpy.tractograms.uncompress import uncompress
+
 from scilpy.tractanalysis.tools import \
     extract_longest_segments_from_profile as segmenting_func
+from scilpy.tractanalysis.uncompress import uncompress
 
 # We could try using nan instead of zeros for non-existing previous dirs...
 DEFAULT_UNEXISTING_VAL = torch.zeros((1, 3), dtype=torch.float32)

diff --git a/requirements.txt b/requirements.txt
@@ -1,11 +1,8 @@
 # Supported for python 3.10
 # Should work for python > 3.8.
 
-# ----------
-# Scilpy and dipy must be installed manually first.
-# (or run pip install -r requirements_github.txt)
-# Not adding here to let you use your favorite version.
-# ----------
+scilpy==1.5.0
+
 
 bertviz~=1.4.0  # For transformer's visu
 torch==1.13.*

diff --git a/requirements_github.txt b/requirements_github.txt