Map tests to software builds #673

casparvl · 2024-08-19T09:41:37Z

The tests from the EESSI test suite that are run should depend on which software was built. This PR implements that functionality. Roughly speaking, it does the following:

Get the new modules from module_files.list.txt (in the tempdir)
Use yaml config file (software_to_test.yml) that maps regular expressions matching the (new) module names to a (list of) test(s) that need to be ran for that particular module name. First match in the yml file will be returned, so order is important.
A python code imports both the module_files.list.txt and software_to_test.yml, loops over all build software, each time executing the regular expression matches on the content of the software_to_test.yml, thus finding the tests that should be run for that particular module. If that test wasn't part of an aggregate list yet, it'll append it. Finally, the list is turned into a ReFrame argument string of the form e.g. -n EESSI_GROMACS -n EESSI_ESPRESSO, ... etc.
This argument list will be passed to the ReFrame command in the test step

…software that is build works

… software was built

eessi-bot · 2024-08-19T09:41:41Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-bot · 2024-08-19T09:41:42Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software

…g wasn't passed'

casparvl · 2024-08-19T10:39:05Z

bot: build repo:eessi.io-2023.06-software arch:zen3

eessi-bot · 2024-08-19T10:39:07Z

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- expanded format: build repository:eessi.io-2023.06-software architecture:zen3
handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- submitted job 16528, for details & status see Map tests to software builds #673 (comment)

eessi-bot · 2024-08-19T10:39:08Z

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handling command build repository:eessi.io-2023.06-software architecture:zen3 resulted in:
- no jobs were submitted

eessi-bot · 2024-08-19T10:39:12Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16528

date	job status	comment
Aug 19 10:39:11 UTC 2024	submitted	job id `16528` awaits release by job manager
Aug 19 10:39:54 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 10:40:55 UTC 2024	running	job `16528` is running
Aug 19 10:57:12 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-16528.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Aug 19 10:57:12 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 18/18 test case(s) from 18 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16528.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-19T12:25:05Z

Hmmm... I guess dumping the module_file.list.txt in the current directory in the tarball step doesn't make it available in the test step. Maybe the working dirs are different. I'll try interactively to see what is going on.

ESC[32mSuccesfully ran 'reframe --version'ESC[0m
Loaded mappings from 'tests/eessi_test_mapping/software_to_tests.yml'
Traceback (most recent call last):
  File "/project/60006/SHARED/jobs/2024.08/pr_673/event_422aba90-5e17-11ef-9169-227fc6b2fccc/run_000/linux_x86_64_amd_zen3/eessi.io-2023.06-software/tests/eessi_test_mapping/map_software_to_test.py", line 78, in <module>
    main(args.mapping_file, args.module_list, args.debug)
  File "/project/60006/SHARED/jobs/2024.08/pr_673/event_422aba90-5e17-11ef-9169-227fc6b2fccc/run_000/linux_x86_64_amd_zen3/eessi.io-2023.06-software/tests/eessi_test_mapping/map_software_to_test.py", line 42, in main
    software_names = read_software_names(module_file)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/project/60006/SHARED/jobs/2024.08/pr_673/event_422aba90-5e17-11ef-9169-227fc6b2fccc/run_000/linux_x86_64_amd_zen3/eessi.io-2023.06-software/tests/eessi_test_mapping/map_software_to_test.py", line 17, in read_software_names
    raise FileNotFoundError(f"Error: {file_path} does not exist.")
FileNotFoundError: Error: module_file.list.txt does not exist.

…e the new test step

casparvl · 2024-08-19T13:21:12Z

bot: build repo:eessi.io-2023.06-software arch:zen3

eessi-bot · 2024-08-19T13:21:15Z

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- submitted job 16635, for details & status see Map tests to software builds #673 (comment)

eessi-bot · 2024-08-19T13:21:19Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16635

date	job status	comment
Aug 19 13:21:18 UTC 2024	submitted	job id `16635` awaits release by job manager
Aug 19 13:21:26 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 13:27:29 UTC 2024	running	job `16635` is running
Aug 19 13:42:46 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16635.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1724074082.tar.gz` size: 0 MiB (132484 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Aug 19 13:42:46 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 18/18 test case(s) from 18 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16635.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…ved correctly. Also, end the test step

casparvl · 2024-08-19T13:40:21Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-19T13:40:24Z

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- submitted job 16636, for details & status see Map tests to software builds #673 (comment)

eessi-bot · 2024-08-19T13:40:25Z

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handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
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eessi-bot · 2024-08-19T13:40:29Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16636

date	job status	comment
Aug 19 13:40:28 UTC 2024	submitted	job id `16636` awaits release by job manager
Aug 19 13:40:43 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 13:45:49 UTC 2024	running	job `16636` is running
Aug 19 13:47:51 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16636.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724075235.tar.gz` size: 0 MiB (132315 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 19 13:47:51 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-16636.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-19T14:20:28Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-19T14:20:31Z

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eessi-bot · 2024-08-19T14:20:31Z

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eessi-bot · 2024-08-19T14:20:35Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16638

date	job status	comment
Aug 19 14:20:34 UTC 2024	submitted	job id `16638` awaits release by job manager
Aug 19 14:21:03 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 14:22:05 UTC 2024	running	job `16638` is running
Aug 19 14:25:09 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16638.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724077376.tar.gz` size: 0 MiB (132200 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 19 14:25:09 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16638.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…sts are always added at the end, even if all test had other matches

casparvl · 2024-08-19T14:32:49Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-19T14:32:52Z

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handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
- submitted job 16639, for details & status see Map tests to software builds #673 (comment)

eessi-bot · 2024-08-19T14:32:53Z

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handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
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eessi-bot · 2024-08-19T14:32:57Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16639

date	job status	comment
Aug 19 14:32:56 UTC 2024	submitted	job id `16639` awaits release by job manager
Aug 19 14:33:12 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 14:34:14 UTC 2024	running	job `16639` is running
Aug 19 14:38:18 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16639.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724078094.tar.gz` size: 0 MiB (132141 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 19 14:38:18 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 8/8 test case(s) from 8 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16639.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-19T14:43:04Z

This looks like it should be:

Loaded mappings from 'tests/eessi_test_mapping/software_to_tests.yml'
Read software names from 'module_files.list.txt'
Software: patchelf/0.17.2-GCCcore-12.2.0 -> Tests: ['EESSI_OSU']
Adding default set of tests: ['EESSI_OSU']
Full list of tests to run: ['EESSI_OSU']
Argument string: -n EESSI_OSU
-n EESSI_OSU
ESC[32mSuccesfully extracted names of tests to run: -n EESSI_OSUESC[0m
Listing tests: reframe --tag CI --tag 1_node --nocolor -n EESSI_OSU --list

Just for the sake of argument, let me retry this with a change to the mapping file so that EESSI_ESPRESSO test's are also run for patchelf.

… EESSI_ESPRESSO and EESS_OSU tests

casparvl · 2024-08-19T14:43:52Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-19T14:43:55Z

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handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
- submitted job 16640, for details & status see Map tests to software builds #673 (comment)

eessi-bot · 2024-08-19T14:43:56Z

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handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
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eessi-bot · 2024-08-19T14:44:00Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16640

date	job status	comment
Aug 19 14:43:59 UTC 2024	submitted	job id `16640` awaits release by job manager
Aug 19 14:44:21 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 14:45:24 UTC 2024	running	job `16640` is running
Aug 19 14:58:44 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16640.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724078763.tar.gz` size: 0 MiB (132156 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 19 14:58:44 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16640.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-19T14:59:24Z

bot: build repo:eessi.io-2023.06-software arch:zen2

eessi-bot · 2024-08-19T14:59:27Z

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handling command build repository:eessi.io-2023.06-software architecture:zen2 resulted in:
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eessi-bot · 2024-08-19T14:59:28Z

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eessi-bot · 2024-08-19T14:59:32Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.08/pr_673/16643

date	job status	comment
Aug 19 14:59:31 UTC 2024	submitted	job id `16643` awaits release by job manager
Aug 19 14:59:47 UTC 2024	released	job awaits launch by Slurm scheduler
Aug 19 15:00:49 UTC 2024	running	job `16643` is running
Aug 19 15:14:37 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-16643.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1724079689.tar.gz` size: 0 MiB (130984 bytes) entries: 24 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `patchelf/0.17.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `patchelf/0.17.2-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Aug 19 15:14:37 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-16643.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2024-08-19T15:02:44Z

Ok, this looks exactly as it was intended:

Loaded mappings from 'tests/eessi_test_mapping/software_to_tests.yml'
Read software names from 'module_files.list.txt'
Software: patchelf/0.17.2-GCCcore-12.2.0 -> Tests: ['EESSI_ESPRESSO']
Adding default set of tests: ['EESSI_OSU']
Full list of tests to run: ['EESSI_ESPRESSO', 'EESSI_OSU']
Argument string: -n EESSI_ESPRESSO -n EESSI_OSU
ESC[32mSuccesfully extracted names of tests to run: -n EESSI_ESPRESSO -n EESSI_OSUESC[0m
Listing tests: reframe --tag CI --tag 1_node --nocolor -n EESSI_ESPRESSO -n EESSI_OSU --list

bedroge

Lgtm, really nice improvement!

boegel · 2024-09-21T09:32:16Z

tests/eessi_test_mapping/software_to_tests.yml

+  OSU-Micro-Benchmarks/*:
+    - EESSI_OSU_Micro_Benchmarks
+  GROMACS/*:
+    - EESSI_GROMACS


@casparvl We'll need to maintain this as we add more tests to the test suite, right?

Wouldn't it make more sense to make sure that we consistently use EESSI_<software_name>, so we don't need this mapping file at all?

Caspar van Leeuwen added 4 commits August 19, 2024 10:07

Add gnuplot, just so we can show how test selection depending on the …

ff3e006

…software that is build works

Add test mapping so that we can run selected tests depending on which…

9ee9714

… software was built

This file was there for testing, and added by accident

5f2ce9b

Add mapping for software to test names

bc02ddb

casparvl added the enhancement New feature or request label Aug 19, 2024

Caspar van Leeuwen added 5 commits August 19, 2024 12:11

Make sure module files list is available in the test step

6c4dfc8

This was just an example, removing

3388003

Integrate selection of tests into test step

6c04860

Fix arguments

63deb00

Fix small bug that it wasn't generating the argument list when --debu…

2921f99

…g wasn't passed'

Caspar van Leeuwen added 2 commits August 19, 2024 15:19

Remove gnuplot, since it is already present

e172100

Add some fast building but irrelevant piece of software to demonstrat…

dd1f315

…e the new test step

Caspar van Leeuwen added 2 commits August 19, 2024 15:32

Make sure the module_file.list.txt is copied to the original working dir

4a41bad

Make sure we throw a fatal_error when the test selection isn't retrei…

d2facfd

…ved correctly. Also, end the test step

Corrected typo

8cd2944

Add comments to mapping file. Tweak mapping script so that default te…

bf6764b

…sts are always added at the end, even if all test had other matches

For the sake of argument, let's show that now, this will run both the…

24d4e85

… EESSI_ESPRESSO and EESS_OSU tests

Final polishing

fa3a299

Make reasonable initial mapping file

3bccfa1

casparvl marked this pull request as ready for review August 19, 2024 15:47

casparvl mentioned this pull request Aug 19, 2024

Only run OSU test for now in test step. #571

Closed

Undo adding patchelf

93b699f

bedroge approved these changes Sep 17, 2024

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bedroge merged commit f67d903 into EESSI:2023.06-software.eessi.io Sep 17, 2024
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casparvl deleted the map_tests_to_software_builds branch September 18, 2024 18:57

boegel reviewed Sep 21, 2024

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boegel mentioned this pull request Oct 2, 2024

{2023.06}[foss/2023a] gmsh v4.12.2, basemap v1.39, geopandas v0.14.2 #736

Merged

Map tests to software builds #673

Map tests to software builds #673

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