Merge pull request #254 from EESSIbot/update-software-overview-172303…

…4223 update overview of available software
EESSI · Aug 7, 2024 · d9016de · d9016de
2 parents ea3148f + 00145dd
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diff --git a/docs/available_software/data/json_data.json b/docs/available_software/data/json_data.json
diff --git a/docs/available_software/data/json_data_detail.json b/docs/available_software/data/json_data_detail.json
diff --git a/docs/available_software/detail/ALL.md b/docs/available_software/detail/ALL.md
@@ -21,7 +21,7 @@ To start using ALL, load one of these modules using a `module load` command like
 module load ALL/0.9.2-foss-2023a
 ```
 
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diff --git a/docs/available_software/detail/AOFlagger.md b/docs/available_software/detail/AOFlagger.md
@@ -21,7 +21,7 @@ To start using AOFlagger, load one of these modules using a `module load` comman
 module load AOFlagger/3.4.0-foss-2023b
 ```
 
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diff --git a/docs/available_software/detail/ASE.md b/docs/available_software/detail/ASE.md
@@ -21,7 +21,7 @@ To start using ASE, load one of these modules using a `module load` command like
 module load ASE/3.22.1-gfbf-2022b
 ```
 
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diff --git a/docs/available_software/detail/ATK.md b/docs/available_software/detail/ATK.md
@@ -21,7 +21,7 @@ To start using ATK, load one of these modules using a `module load` command like
 module load ATK/2.38.0-GCCcore-12.3.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/Abseil.md b/docs/available_software/detail/Abseil.md
@@ -21,7 +21,7 @@ To start using Abseil, load one of these modules using a `module load` command l
 module load Abseil/20230125.3-GCCcore-12.3.0
 ```
 
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diff --git a/docs/available_software/detail/Armadillo.md b/docs/available_software/detail/Armadillo.md
@@ -21,7 +21,7 @@ To start using Armadillo, load one of these modules using a `module load` comman
 module load Armadillo/12.8.0-foss-2023b
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/Arrow.md b/docs/available_software/detail/Arrow.md
@@ -21,7 +21,7 @@ To start using Arrow, load one of these modules using a `module load` command li
 module load Arrow/14.0.1-gfbf-2023a
 ```
 
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diff --git a/docs/available_software/detail/BCFtools.md b/docs/available_software/detail/BCFtools.md
@@ -21,7 +21,7 @@ To start using BCFtools, load one of these modules using a `module load` command
 module load BCFtools/1.18-GCC-12.3.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/BLAST+.md b/docs/available_software/detail/BLAST+.md
@@ -21,7 +21,7 @@ To start using BLAST+, load one of these modules using a `module load` command l
 module load BLAST+/2.14.1-gompi-2023a
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/BLIS.md b/docs/available_software/detail/BLIS.md
@@ -21,7 +21,7 @@ To start using BLIS, load one of these modules using a `module load` command lik
 module load BLIS/0.9.0-GCC-13.2.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/BWA.md b/docs/available_software/detail/BWA.md
@@ -21,7 +21,7 @@ To start using BWA, load one of these modules using a `module load` command like
 module load BWA/0.7.18-GCCcore-12.3.0
 ```
 
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diff --git a/docs/available_software/detail/Bazel.md b/docs/available_software/detail/Bazel.md
@@ -21,7 +21,7 @@ To start using Bazel, load one of these modules using a `module load` command li
 module load Bazel/6.3.1-GCCcore-12.3.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/BeautifulSoup.md b/docs/available_software/detail/BeautifulSoup.md
@@ -21,7 +21,7 @@ To start using BeautifulSoup, load one of these modules using a `module load` co
 module load BeautifulSoup/4.12.2-GCCcore-12.3.0
 ```
 
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diff --git a/docs/available_software/detail/BioPerl.md b/docs/available_software/detail/BioPerl.md
@@ -0,0 +1,42 @@
+---
+hide:
+  - toc
+---
+
+BioPerl
+=======
+
+
+Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
+
+https://bioperl.org/
+# Available modules
+
+
+The overview below shows which BioPerl installations are available per target architecture in EESSI, ordered based on software version (new to old).
+
+To start using BioPerl, load one of these modules using a `module load` command like:
+
+```shell
+module load BioPerl/1.7.8-GCCcore-12.3.0
+```
+
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
+
+| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|BioPerl/1.7.8-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
+|BioPerl/1.7.8-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
+
+
+### BioPerl/1.7.8-GCCcore-12.3.0
+
+This is a list of extensions included in the module:
+
+Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::Writer-0.900
+
+### BioPerl/1.7.8-GCCcore-12.2.0
+
+This is a list of extensions included in the module:
+
+Bio::Procedural-1.7.4, BioPerl-1.7.8, XML::Writer-0.900
diff --git a/docs/available_software/detail/Biopython.md b/docs/available_software/detail/Biopython.md
@@ -21,7 +21,7 @@ To start using Biopython, load one of these modules using a `module load` comman
 module load Biopython/1.83-foss-2023a
 ```
 
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diff --git a/docs/available_software/detail/Bison.md b/docs/available_software/detail/Bison.md
@@ -21,7 +21,7 @@ To start using Bison, load one of these modules using a `module load` command li
 module load Bison/3.8.2-GCCcore-13.2.0
 ```
 
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diff --git a/docs/available_software/detail/Boost.MPI.md b/docs/available_software/detail/Boost.MPI.md
@@ -21,7 +21,7 @@ To start using Boost.MPI, load one of these modules using a `module load` comman
 module load Boost.MPI/1.83.0-gompi-2023b
 ```
 
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diff --git a/docs/available_software/detail/Boost.Python.md b/docs/available_software/detail/Boost.Python.md
@@ -21,7 +21,7 @@ To start using Boost.Python, load one of these modules using a `module load` com
 module load Boost.Python/1.83.0-GCC-13.2.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/Boost.md b/docs/available_software/detail/Boost.md
@@ -21,7 +21,7 @@ To start using Boost, load one of these modules using a `module load` command li
 module load Boost/1.83.0-GCC-13.2.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/Brotli.md b/docs/available_software/detail/Brotli.md
@@ -21,7 +21,7 @@ To start using Brotli, load one of these modules using a `module load` command l
 module load Brotli/1.1.0-GCCcore-13.2.0
 ```
 
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diff --git a/docs/available_software/detail/Brunsli.md b/docs/available_software/detail/Brunsli.md
@@ -21,7 +21,7 @@ To start using Brunsli, load one of these modules using a `module load` command
 module load Brunsli/0.1-GCCcore-12.3.0
 ```
 
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diff --git a/docs/available_software/detail/CDO.md b/docs/available_software/detail/CDO.md
@@ -21,7 +21,7 @@ To start using CDO, load one of these modules using a `module load` command like
 module load CDO/2.2.2-gompi-2023b
 ```
 
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diff --git a/docs/available_software/detail/CFITSIO.md b/docs/available_software/detail/CFITSIO.md
@@ -21,7 +21,7 @@ To start using CFITSIO, load one of these modules using a `module load` command
 module load CFITSIO/4.3.1-GCCcore-13.2.0
 ```
 
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diff --git a/docs/available_software/detail/CGAL.md b/docs/available_software/detail/CGAL.md
@@ -21,7 +21,7 @@ To start using CGAL, load one of these modules using a `module load` command lik
 module load CGAL/5.6-GCCcore-12.3.0
 ```
 
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+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
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diff --git a/docs/available_software/detail/CMake.md b/docs/available_software/detail/CMake.md
@@ -21,7 +21,7 @@ To start using CMake, load one of these modules using a `module load` command li
 module load CMake/3.27.6-GCCcore-13.2.0
 ```
 
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diff --git a/docs/available_software/detail/CP2K.md b/docs/available_software/detail/CP2K.md
@@ -21,7 +21,7 @@ To start using CP2K, load one of these modules using a `module load` command lik
 module load CP2K/2023.1-foss-2023a
 ```
 
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diff --git a/docs/available_software/detail/CUDA-Samples.md b/docs/available_software/detail/CUDA-Samples.md
@@ -21,7 +21,7 @@ To start using CUDA-Samples, load one of these modules using a `module load` com
 module load CUDA-Samples/12.1-GCC-12.3.0-CUDA-12.1.1
 ```
 
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diff --git a/docs/available_software/detail/CUDA.md b/docs/available_software/detail/CUDA.md
@@ -21,7 +21,7 @@ To start using CUDA, load one of these modules using a `module load` command lik
 module load CUDA/12.1.1
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |

diff --git a/docs/available_software/detail/CapnProto.md b/docs/available_software/detail/CapnProto.md
@@ -21,7 +21,7 @@ To start using CapnProto, load one of these modules using a `module load` comman
 module load CapnProto/1.0.1-GCCcore-12.3.0
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |

diff --git a/docs/available_software/detail/Cartopy.md b/docs/available_software/detail/Cartopy.md
@@ -21,7 +21,7 @@ To start using Cartopy, load one of these modules using a `module load` command
 module load Cartopy/0.22.0-foss-2023a
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |

diff --git a/docs/available_software/detail/Catch2.md b/docs/available_software/detail/Catch2.md
@@ -21,7 +21,7 @@ To start using Catch2, load one of these modules using a `module load` command l
 module load Catch2/2.13.9-GCCcore-13.2.0
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |

diff --git a/docs/available_software/detail/Cbc.md b/docs/available_software/detail/Cbc.md
@@ -21,7 +21,7 @@ To start using Cbc, load one of these modules using a `module load` command like
 module load Cbc/2.10.11-foss-2023a
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |

diff --git a/docs/available_software/detail/Cgl.md b/docs/available_software/detail/Cgl.md
@@ -21,7 +21,7 @@ To start using Cgl, load one of these modules using a `module load` command like
 module load Cgl/0.60.8-foss-2023a
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |

diff --git a/docs/available_software/detail/Clp.md b/docs/available_software/detail/Clp.md
@@ -21,7 +21,7 @@ To start using Clp, load one of these modules using a `module load` command like
 module load Clp/1.17.9-foss-2023a
 ```
 
-*(This data was automatically generated on Tue, 06 Aug 2024 at 04:19:11 UTC)*  
+*(This data was automatically generated on Wed, 07 Aug 2024 at 12:36:59 UTC)*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |