Warning: This project and repository is under heavy development. We will tell you when it is ready.
A version of the book is rendered here. We are not making regular releases yet and the rendered version is likely to be out of date.
We are writing a book on the current single-cell analysis best-practices with extensive tutorials and code examples.
We would like to invite the community to further improve the tutorial and the teaching material. Please read contributing for further instructions.
In case of questions or problems, please get in touch by posting an issue in this repository.
All notebooks for the various steps can be found in the jupyter book folder. These can easily be reused for your own projects.
This tutorial would not be possible without the input of all Theislab members and the countless benchmarks and reviews of various single-cell tools by the community.