Ensure noise filter works when MC truth is absent #593
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| name: Linting and tests | |
| on: | |
| push: | |
| branches: [ develop, main ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ develop, main ] | |
| workflow_dispatch: {} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| mpi_enabled: [0, 1] | |
| fail-fast: false | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v2 | |
| - name: checkout h5flow | |
| run: | | |
| cd .. | |
| git clone https://github.com/peter-madigan/h5flow.git | |
| - name: setup conda (mpi) | |
| uses: conda-incubator/setup-miniconda@v2 | |
| if: matrix.mpi_enabled == 1 | |
| env: | |
| CC: mpicc | |
| HDF5_MPI: "ON" | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test | |
| python-version: "3.11" | |
| environment-file: test/env.yaml | |
| - name: setup conda (no mpi) | |
| uses: conda-incubator/setup-miniconda@v2 | |
| if: matrix.mpi_enabled == 0 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test | |
| python-version: "3.11" | |
| environment-file: test/env-nompi.yaml | |
| - name: install h5flow (mpi) | |
| if: matrix.mpi_enabled == 1 | |
| env: | |
| CC: mpicc | |
| HDF5_MPI: "ON" | |
| run: | | |
| cd ../h5flow | |
| conda env update --file environment.yml | |
| pip install . | |
| - name: install h5flow (no mpi) | |
| if: matrix.mpi_enabled == 0 | |
| run: | | |
| cd ../h5flow | |
| conda env update --file environment-nompi.yml | |
| pip install . | |
| - name: install | |
| run: | | |
| pip install . | |
| - name: lint | |
| run: | | |
| conda install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| python -m flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| python -m flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: test | |
| run: | | |
| pytest -vv --log-level=DEBUG |