fixed up xnat config

Australian-Imaging-Service · Aug 6, 2024 · 8c38b71 · 8c38b71
1 parent 5539eb3
commit 8c38b71
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/tutorial/start-up-script.sh b/tutorial/start-up-script.sh
@@ -1,6 +1,7 @@
 #!/usr/bin/env bash
 
 ssh-keygen -t rsa -N "" -f $HOME/.ssh/id_rsa.pub
+echo 'export PATH=$HOME/.local/bin:$PATH' >> ~/.bashrc
 
 # Clone the pipelines-community repository
 mkdir -p ~/git
@@ -13,7 +14,7 @@ pushd ~/git/pipelines-community
 git pull
 
 # Install the pipelines-community repository
-pip install -r ./tutorial/requirements.txt
+pip install --upgrade -r ./tutorial/requirements.txt
 
 # Pre-build/pull the required XNAT docker images to save time
 xnat4tests -c ./tutorial/xnat4tests-config.yaml start --with-data openneuro-t1w

diff --git a/tutorial/xnat4tests-config.yaml b/tutorial/xnat4tests-config.yaml
@@ -1,4 +1,4 @@
 build_args:
   xnat_cs_plugin_version: 3.4.3
   xnat_version: 1.8.10.1
-xnat_root_dir: /Users/tclose/xnat4tests-root # /home/ubuntu/xnat4tests-root
+xnat_root_dir: /home/ubuntu/xnat4tests-root