Add push script

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/api/models/arcotl/architecture/legacy/LegacyModelExtractionStateByArCoTL.java

@@ -1,4 +1,4 @@
-/* Licensed under MIT 2023. */
+/* Licensed under MIT 2023-2024. */
 package edu.kit.kastel.mcse.ardoco.core.api.models.arcotl.architecture.legacy;
 
 import java.util.ArrayList;
@@ -83,16 +83,16 @@ private static ImmutableList<ModelInstance> initCodeInstances(CodeModel codeMode
     }
 
     private static void fillPackages(Collection<? extends CodePackage> packages, List<ModelInstance> instances) {
-        for (var modelElement : packages) { 
-            String path = modelElement.getName();
+        for (var modelElement : packages) {
+            StringBuilder path = new StringBuilder(modelElement.getName());
             CodeModule parent = modelElement.getParent();
             while (parent != null) {
-                path = parent.getName() + "/" + path;
+                path.insert(0, parent.getName() + "/");
                 parent = parent.getParent();
             }
             // Ensure that package is handled as directory
-            path += "/";
-            instances.add(new ModelInstanceImpl(modelElement.getName(), "Package", path));
+            path.append("/");
+            instances.add(new ModelInstanceImpl(modelElement.getName(), "Package", path.toString()));
         }
     }
 

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/api/models/arcotl/code/CodeCompilationUnit.java

@@ -63,7 +63,7 @@ public List<String> getParentPackageNames() {
         while (parent.hasParent()) {
             parent = parent.getParent();
             if (parent instanceof CodePackage) {
-                parents.add(0, parent.getName());
+                parents.addFirst(parent.getName());
             }
         }
         return parents;

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/api/stage/textextraction/MappingKind.java

@@ -1,18 +1,9 @@
-/* Licensed under MIT 2021-2023. */
+/* Licensed under MIT 2021-2024. */
 package edu.kit.kastel.mcse.ardoco.core.api.stage.textextraction;
 
 /**
  * The mapping type of a mapping state defines whether the mapping is a name or a type.
  */
 public enum MappingKind {
-
-    /**
-     * A noun mapping can be identified as an identifier {@link #NAME}, a potential type {@link #TYPE}
-     */
-    NAME,
-    /**
-     * A noun mapping can be identified as an identifier {@link #NAME}, a potential type {@link #TYPE}
-     */
-    TYPE
-
+    NAME, TYPE
 }

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/api/tracelink/MultiHopTransitiveTraceLink.java

@@ -1,3 +1,4 @@
+/* Licensed under MIT 2024. */
 package edu.kit.kastel.mcse.ardoco.core.api.tracelink;
 
 import java.util.ArrayList;
@@ -80,10 +81,4 @@ public boolean equals(Object obj) {
         }
         return Objects.equals(this.allLinks, other.allLinks);
     }
-
-    @Override
-    public String toString() {
-        return this.asPair().toString();
-    }
-
 }

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/api/tracelink/SamCodeTraceLink.java

@@ -42,9 +42,4 @@ public boolean equals(Object obj) {
         }
         return Objects.equals(this.asPair(), other.asPair());
     }
-
-    @Override
-    public String toString() {
-        return this.asPair().toString();
-    }
 }

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/common/RepositoryHandler.java

@@ -1,4 +1,4 @@
-/* Licensed under MIT 2023. */
+/* Licensed under MIT 2023-2024. */
 package edu.kit.kastel.mcse.ardoco.core.common;
 
 import java.io.File;
@@ -35,7 +35,7 @@ public static boolean shallowCloneRepository(String repositoryLink, String desir
             List<RevCommit> commits = new ArrayList<>();
             git.log().setMaxCount(1).call().forEach(commits::add);
             assert commits.size() == 1;
-            if (commits.get(0).getId().startsWith(AbbreviatedObjectId.fromString(desiredHash))) {
+            if (commits.getFirst().getId().startsWith(AbbreviatedObjectId.fromString(desiredHash))) {
                 return true;
             }
 

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/common/similarity/wordsim/measures/glove/GloveMeasure.java

@@ -55,7 +55,7 @@ public double getSimilarity(ComparisonContext ctx) {
         try {
             return this.compareVectors(ctx.firstTerm(), ctx.secondTerm());
         } catch (RetrieveVectorException e) {
-            LOGGER.error("Failed to compare glove vectors: " + ctx, e);
+            LOGGER.error("Failed to compare glove vectors: {}", ctx, e);
             return Double.NaN;
         }
     }

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/common/similarity/wordsim/measures/sewordsim/SEWordSimMeasure.java

@@ -54,7 +54,7 @@ public double getSimilarity(ComparisonContext ctx) {
         try {
             similarity = this.getDataSource().getSimilarity(ctx.firstTerm(), ctx.secondTerm()).orElse(Double.NaN);
         } catch (SQLException e) {
-            LOGGER.error("Failed to query the SEWordSim database for word comparison: " + ctx, e);
+            LOGGER.error("Failed to query the SEWordSim database for word comparison: {}", ctx, e);
         }
         return similarity; // words are probably missing from the database
     }

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/common/similarity/wordsim/vector/VectorUtils.java

@@ -1,4 +1,4 @@
-/* Licensed under MIT 2022-2023. */
+/* Licensed under MIT 2022-2024. */
 package edu.kit.kastel.mcse.ardoco.core.common.similarity.wordsim.vector;
 
 import java.util.Objects;
@@ -76,10 +76,6 @@ public static double cosineSimilarity(float[] firstVec, float[] secondVec) {
     public static boolean isZero(double[] vector) {
         Objects.requireNonNull(vector);
 
-        if (vector.length == 0) {
-            return true;
-        }
-
         for (double entry : vector) {
             if (entry != 0.0) {
                 return false;
@@ -98,10 +94,6 @@ public static boolean isZero(double[] vector) {
     public static boolean isZero(float[] vector) {
         Objects.requireNonNull(vector);
 
-        if (vector.length <= 0) {
-            return true;
-        }
-
         for (float entry : vector) {
             if (entry != 0.0f) {
                 return false;

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/data/AbstractState.java

@@ -1,6 +1,7 @@
 /* Licensed under MIT 2022-2024. */
 package edu.kit.kastel.mcse.ardoco.core.data;
 
+import java.io.Serial;
 import java.util.SortedMap;
 
 import edu.kit.kastel.mcse.ardoco.core.configuration.AbstractConfigurable;
@@ -10,6 +11,7 @@
  */
 public abstract class AbstractState extends AbstractConfigurable implements PipelineStepData {
 
+    @Serial
     private static final long serialVersionUID = -3318799425973820663L;
 
     @Override

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/pipeline/AbstractExecutionStage.java

@@ -60,15 +60,15 @@ protected final void preparePipelineSteps() {
      */
     @Override
     protected void before() {
-        //Nothing by default
+        // Nothing by default
     }
 
     /**
      * Called after all agents
      */
     @Override
     protected void after() {
-        //Nothing by default
+        // Nothing by default
     }
 
     /**

framework/common/src/main/java/edu/kit/kastel/mcse/ardoco/core/pipeline/agent/PipelineAgent.java

@@ -13,7 +13,7 @@
 
 /**
  * This class represents a pipeline agent that calculates some results for an {@link AbstractExecutionStage} execution stage}.
- *
+ * <p>
  * Implementing classes need to override. Additionally, sub-classes are free to override {@link #initializeState()} to execute code at the beginning of the
  * initialization before the main processing.
  */

framework/text-provider-json/src/main/java/edu/kit/kastel/mcse/ardoco/core/textproviderjson/converter/DtoToObjectConverter.java

@@ -89,7 +89,7 @@ public Phrase parseConstituencyTree(String constituencyTree, List<Word> wordsOfS
                 if (wordsOfSentence.isEmpty()) {
                     throw new NotConvertableException("Constituency tree does not match words of sentence");
                 }
-                words.add(wordsOfSentence.remove(0));
+                words.add(wordsOfSentence.removeFirst());
             } else {
                 subPhrases.add(parseConstituencyTree(subtree, wordsOfSentence));
             }

framework/text-provider-json/src/main/java/edu/kit/kastel/mcse/ardoco/core/textproviderjson/converter/ObjectToDtoConverter.java

@@ -1,4 +1,4 @@
-/* Licensed under MIT 2023. */
+/* Licensed under MIT 2023-2024. */
 package edu.kit.kastel.mcse.ardoco.core.textproviderjson.converter;
 
 import java.io.IOException;
@@ -116,22 +116,22 @@ private String convertToSubtree(Phrase phrase) {
         while (!words.isEmpty() || !subphrases.isEmpty()) {
             if (subphrases.isEmpty()) {
                 // word next
-                Word word = words.remove(0);
+                Word word = words.removeFirst();
                 constituencyTree.append(TREE_SEPARATOR).append(convertWordToTree(word));
             } else if (words.isEmpty()) {
                 // phrase next
-                Phrase subphrase = subphrases.remove(0);
+                Phrase subphrase = subphrases.removeFirst();
                 constituencyTree.append(TREE_SEPARATOR).append(convertToSubtree(subphrase));
             } else {
-                int wordIndex = words.get(0).getPosition();
-                List<Integer> phraseWordIndices = subphrases.get(0).getContainedWords().toList().stream().map(Word::getPosition).toList();
+                int wordIndex = words.getFirst().getPosition();
+                List<Integer> phraseWordIndices = subphrases.getFirst().getContainedWords().toList().stream().map(Word::getPosition).toList();
                 if (wordIndex < Collections.min(phraseWordIndices)) {
                     // word next
-                    Word word = words.remove(0);
+                    Word word = words.removeFirst();
                     constituencyTree.append(TREE_SEPARATOR).append(convertWordToTree(word));
                 } else {
                     // phrase next
-                    Phrase subphrase = subphrases.remove(0);
+                    Phrase subphrase = subphrases.removeFirst();
                     constituencyTree.append(TREE_SEPARATOR).append(convertToSubtree(subphrase));
                 }
             }

framework/text-provider-json/src/main/java/edu/kit/kastel/mcse/ardoco/core/textproviderjson/textobject/WordImpl.java

@@ -1,4 +1,4 @@
-/* Licensed under MIT 2022-2023. */
+/* Licensed under MIT 2022-2024. */
 package edu.kit.kastel.mcse.ardoco.core.textproviderjson.textobject;
 
 import java.util.List;
@@ -118,7 +118,7 @@ private Phrase loadPhrase() {
         var currentPhrase = getSentence().getPhrases().toList().stream().filter(p -> p.getContainedWords().contains(this)).findFirst().orElseThrow();
         var subPhrases = List.of(currentPhrase);
         while (!subPhrases.isEmpty()) {
-            currentPhrase = subPhrases.get(0);
+            currentPhrase = subPhrases.getFirst();
             subPhrases = currentPhrase.getSubPhrases().toList().stream().filter(p -> p.getContainedWords().contains(this)).toList();
         }
         return currentPhrase;

framework/text-provider-json/src/test/java/edu/kit/kastel/mcse/ardoco/core/textproviderjson/converter/TreeParserTest.java

@@ -1,4 +1,4 @@
-/* Licensed under MIT 2023. */
+/* Licensed under MIT 2023-2024. */
 package edu.kit.kastel.mcse.ardoco.core.textproviderjson.converter;
 
 import java.util.ArrayList;
@@ -24,7 +24,7 @@ class TreeParserTest {
             POSTag.VERB_SINGULAR_PRESENT_THIRD_PERSON, null, null, null), new WordImpl(null, 2, 0, "me", POSTag.PRONOUN_PERSONAL, null, null, null),
             new WordImpl(null, 3, 0, ".", POSTag.CLOSER, null, null, null)));
     Phrase subsubphrase = new PhraseImpl(Lists.immutable.of(words.get(2)), PhraseType.NP, new ArrayList<>());
-    List<Phrase> subphrases = List.of(new PhraseImpl(Lists.immutable.of(words.get(0)), PhraseType.NP, new ArrayList<>()), new PhraseImpl(Lists.immutable.of(
+    List<Phrase> subphrases = List.of(new PhraseImpl(Lists.immutable.of(words.getFirst()), PhraseType.NP, new ArrayList<>()), new PhraseImpl(Lists.immutable.of(
             words.get(1)), PhraseType.VP, List.of(subsubphrase)));
     Phrase phrase = new PhraseImpl(Lists.immutable.of(words.get(3)), PhraseType.S, subphrases);
     Phrase expectedPhrase = new PhraseImpl(Lists.immutable.empty(), PhraseType.ROOT, List.of(phrase));

pipeline-core/src/main/java/edu/kit/kastel/mcse/ardoco/core/api/output/ArDoCoResult.java

@@ -20,7 +20,6 @@
 import edu.kit.kastel.mcse.ardoco.core.api.entity.ArchitectureEntity;
 import edu.kit.kastel.mcse.ardoco.core.api.models.Metamodel;
 import edu.kit.kastel.mcse.ardoco.core.api.models.ModelStates;
-import edu.kit.kastel.mcse.ardoco.core.api.models.arcotl.Model;
 import edu.kit.kastel.mcse.ardoco.core.api.models.arcotl.architecture.legacy.LegacyModelExtractionState;
 import edu.kit.kastel.mcse.ardoco.core.api.models.arcotl.architecture.legacy.ModelInstance;
 import edu.kit.kastel.mcse.ardoco.core.api.models.arcotl.code.CodeCompilationUnit;