Remove jackson data-bind (#158)

Signed-off-by: Prabhu Subramanian <[email protected]>

build.sbt

@@ -1,9 +1,9 @@
 name                     := "atom"
 ThisBuild / organization := "io.appthreat"
-ThisBuild / version      := "2.0.19"
+ThisBuild / version      := "2.0.20"
 ThisBuild / scalaVersion := "3.5.0"
 
-val chenVersion = "2.1.6"
+val chenVersion = "2.1.8"
 
 lazy val atom = Projects.atom
 
@@ -33,7 +33,6 @@ libraryDependencies ++= Seq(
 
 excludeDependencies ++= Seq(
   ExclusionRule("dev.scalapy", "scalapy-core"),
-  ExclusionRule("org.gradle", "gradle-tooling-api"),
   ExclusionRule("org.scala-lang", "scala3-compiler")
 )
 

ci/trace-native-image.sh

@@ -7,9 +7,9 @@
 # bash ci/trace-native-image.sh py <file path>
 # bash ci/trace-native-image.sh c <file path>
 
-# sdk use java 21.0.1-graalce
+# sdk use java 21.0.2-graalce
 
-sbt clean stage
+# sbt clean stage
 ./atom.sh -J-agentlib:native-image-agent=config-merge-dir=src/main/resources/META-INF/native-image reachables -l $1 -o /tmp/app.atom -s /tmp/reachables.slices.json $2
 
 # bash ci/native-image.sh

codemeta.json

@@ -7,7 +7,7 @@
   "downloadUrl": "https://github.com/AppThreat/atom",
   "issueTracker": "https://github.com/AppThreat/atom/issues",
   "name": "atom",
-  "version": "2.0.19",
+  "version": "2.0.20",
   "description": "Atom is a novel intermediate representation for next-generation code analysis.",
   "applicationCategory": "code-analysis",
   "keywords": [

src/main/resources/META-INF/native-image/reflect-config.json

@@ -14,6 +14,9 @@
 {
   "name":"[Lio.appthreat.x2cpg.Ast;"
 },
+{
+  "name":"[Lio.circe.Json$JNumber;"
+},
 {
   "name":"[Lio.shiftleft.codepropertygraph.generated.nodes.AstNode;"
 },
@@ -107,6 +110,12 @@
 {
   "name":"[Lorg.eclipse.cdt.core.dom.ast.IBinding;"
 },
+{
+  "name":"[Lorg.eclipse.cdt.core.dom.ast.c.ICASTCompositeTypeSpecifier;"
+},
+{
+  "name":"[Lorg.eclipse.cdt.core.dom.ast.c.ICASTDesignator;"
+},
 {
   "name":"[Lorg.eclipse.cdt.core.dom.ast.cpp.ICPPASTNameSpecifier;"
 },
@@ -153,6 +162,10 @@
   "name":"better.files.package$",
   "fields":[{"name":"0bitmap$1"}]
 },
+{
+  "name":"cats.Later",
+  "fields":[{"name":"value$lzy1"}]
+},
 {
   "name":"com.fasterxml.jackson.databind.ext.Java7SupportImpl",
   "methods":[{"name":"<init>","parameterTypes":[] }]
@@ -265,6 +278,10 @@
   "name":"com.github.javaparser.ast.expr.SwitchExpr",
   "allDeclaredFields":true
 },
+{
+  "name":"com.github.javaparser.ast.expr.TypePatternExpr",
+  "allDeclaredFields":true
+},
 {
   "name":"com.github.javaparser.ast.expr.VariableDeclarationExpr",
   "allDeclaredFields":true
@@ -793,6 +810,10 @@
   "name":"io.appthreat.jssrc2cpg.passes.ConstClosurePass",
   "fields":[{"name":"identifiersAssignedCount$lzy1"}]
 },
+{
+  "name":"io.appthreat.jssrc2cpg.passes.RecoverForJavaScriptFile",
+  "fields":[{"name":"exportedIdentifiers$lzy1"}]
+},
 {
   "name":"io.appthreat.jssrc2cpg.utils.AstGenRunner$",
   "fields":[{"name":"astGenCommand$lzy1"}, {"name":"executableDir$lzy1"}, {"name":"executableName$lzy1"}]
@@ -827,15 +848,27 @@
 },
 {
   "name":"io.circe.Decoder$",
-  "fields":[{"name":"0bitmap$1"}]
+  "fields":[{"name":"0bitmap$1"}, {"name":"currencyDecoder$lzy1"}, {"name":"decodeDuration$lzy1"}, {"name":"decodeInstant$lzy1"}, {"name":"decodeJavaBigDecimal$lzy1"}, {"name":"decodeJavaBigInteger$lzy1"}, {"name":"decodeJavaBoolean$lzy1"}, {"name":"decodeJavaByte$lzy1"}, {"name":"decodeJavaCharacter$lzy1"}, {"name":"decodeJavaDouble$lzy1"}, {"name":"decodeJavaFloat$lzy1"}, {"name":"decodeJavaInteger$lzy1"}, {"name":"decodeJavaLong$lzy1"}, {"name":"decodeJavaShort$lzy1"}, {"name":"decodeLocalDate$lzy1"}, {"name":"decodeLocalDateTime$lzy1"}, {"name":"decodeLocalTime$lzy1"}, {"name":"decodeMonthDay$lzy1"}, {"name":"decodeOffsetDateTime$lzy1"}, {"name":"decodeOffsetTime$lzy1"}, {"name":"decodePeriod$lzy1"}, {"name":"decodeURI$lzy1"}, {"name":"decodeUUID$lzy1"}, {"name":"decodeYear$lzy1"}, {"name":"decodeYearMonth$lzy1"}, {"name":"decodeZoneId$lzy1"}, {"name":"decodeZoneOffset$lzy1"}, {"name":"decodeZonedDateTime$lzy1"}]
 },
 {
   "name":"io.circe.Encoder$",
-  "fields":[{"name":"0bitmap$1"}]
+  "fields":[{"name":"0bitmap$1"}, {"name":"currencyEncoder$lzy1"}, {"name":"encodeDuration$lzy1"}, {"name":"encodeInstant$lzy1"}, {"name":"encodeJavaBigDecimal$lzy1"}, {"name":"encodeJavaBigInteger$lzy1"}, {"name":"encodeJavaBoolean$lzy1"}, {"name":"encodeJavaByte$lzy1"}, {"name":"encodeJavaCharacter$lzy1"}, {"name":"encodeJavaDouble$lzy1"}, {"name":"encodeJavaFloat$lzy1"}, {"name":"encodeJavaInteger$lzy1"}, {"name":"encodeJavaLong$lzy1"}, {"name":"encodeJavaShort$lzy1"}, {"name":"encodeLocalDate$lzy1"}, {"name":"encodeLocalDateTime$lzy1"}, {"name":"encodeLocalTime$lzy1"}, {"name":"encodeMonthDay$lzy1"}, {"name":"encodeOffsetDateTime$lzy1"}, {"name":"encodeOffsetTime$lzy1"}, {"name":"encodePeriod$lzy1"}, {"name":"encodeURI$lzy1"}, {"name":"encodeUUID$lzy1"}, {"name":"encodeYear$lzy1"}, {"name":"encodeYearMonth$lzy1"}, {"name":"encodeZoneId$lzy1"}, {"name":"encodeZoneOffset$lzy1"}, {"name":"encodeZonedDateTime$lzy1"}]
 },
 {
   "name":"io.circe.JsonDecimal",
-  "fields":[{"name":"0bitmap$1"}]
+  "fields":[{"name":"0bitmap$1"}, {"name":"toBiggerDecimal$lzy1"}]
+},
+{
+  "name":"io.circe.derivation.ConfiguredDecoder$$anon$3",
+  "fields":[{"name":"constructorNames$lzy3"}, {"name":"elemDecoders$lzy3"}, {"name":"elemDefaults$lzy3"}, {"name":"elemLabels$lzy3"}, {"name":"fp$lzy1"}, {"name":"io$circe$derivation$ConfiguredDecoder$$decodersDict$lzy3"}]
+},
+{
+  "name":"io.circe.derivation.ConfiguredEncoder$$anon$3",
+  "fields":[{"name":"elemEncoders$lzy3"}, {"name":"elemLabels$lzy3"}]
+},
+{
+  "name":"io.circe.derivation.Default$$anon$1",
+  "fields":[{"name":"defaults$lzy1"}]
 },
 {
   "name":"io.shiftleft.codepropertygraph.generated.edges.Factories$",
@@ -994,7 +1027,8 @@
 },
 {
   "name":"java.lang.Class",
-  "queryAllDeclaredMethods":true
+  "queryAllDeclaredMethods":true,
+  "methods":[{"name":"isRecord","parameterTypes":[] }]
 },
 {
   "name":"java.lang.ClassCastException"
@@ -1439,6 +1473,10 @@
   "name":"java.time.chrono.ChronoZonedDateTime",
   "queryAllPublicMethods":true
 },
+{
+  "name":"java.time.format.DateTimeFormatter",
+  "allDeclaredFields":true
+},
 {
   "name":"java.time.format.DateTimeParseException"
 },
@@ -1640,6 +1678,7 @@
 },
 {
   "name":"java.util.Set",
+  "queryAllDeclaredMethods":true,
   "queryAllPublicMethods":true
 },
 {

wrapper/nodejs/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@appthreat/atom",
-  "version": "2.0.19",
+  "version": "2.0.20",
   "description": "Create atom (⚛) representation for your application, packages and libraries",
   "exports": "./index.js",
   "type": "module",