Code

Causal Loop with Polarities#128

Code

Merged

neonWhiteout merged 77 commits intoAlgebraicJulia:mainAlgebraicJulia/StockFlow.jl:mainfrom neonWhiteout:SemanticDomainsNoZeroneonWhiteout/StockFlow.jl:SemanticDomainsNoZeroCopy head branch name to clipboardAug 19, 2024

+2,513-515

Commits

Commits on Mar 19, 2024

• Added composition for causal loop. Temporarily swapped polarities to symbols.

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  2922dca

Commits on Mar 20, 2024

• Restored Polarities to be an enum instead of Symbol. Updated causal loop syntax to use -> +, -> -, -> ±, -> ~, -> !.

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  ee19112

Commits on Apr 15, 2024

• Added a one-line Causal Loop DSL, similar to feet. Invoked via @cl

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  eb77d69

Commits on Apr 25, 2024

• Edits to Composition DSL to also work with CausalLoopF

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  cac81b2

• Fixed enames to provide the symbols for the nodes instead of the indices, allows causal loop composition to work.

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  366d0fb

• Added two simple tests for causal loop composition

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  dbe737c

• export create_foot and cl_macro from Syntax

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  63d72d7

Commits on May 3, 2024

• Updated causal loop tests to reflect new syntax

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  7292b32

• Updated another test's syntax to reflect new causal loop syntax

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  c194530

Commits on May 10, 2024

• Removed some commented out code

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  66b88ee

• Change Graph to GraphSF to not interfere with Catlab Graph.

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  52ab674

Commits on May 11, 2024

• Replace Graph with GraphSF in visualization tests

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  cb1d355

Commits on May 24, 2024

• Eliminate third nested for loop in extract loops with calls to incident

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  6fa1ee6

• Split cycle detection into its own function

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  432218b

• Define operations on polarities and rewrite extract_loops to use a foldl

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  f4d7d94

• Polarity operations. is_walk and is_circuit functions.

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  bde5b0d

Commits on Jun 2, 2024

• Began work to migrate over to newly defined causal loop schema

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Commits on Jun 3, 2024

• Merge branch 'GraphFix' into SemanticDomainsRough

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  8148ac2

Commits on Jun 6, 2024

• Merge branch 'CausalLoopCompose' into SemanticDomainsRough; Introduce conversion between new causal loop schema and old; both can be useful.

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  7ab54c5

Commits on Jun 8, 2024

• Add function to extract all paths with nonduplicated nodes

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  d6a6cc0

Commits on Jun 10, 2024

• Began testing on causal loop functions

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  455751b

Commits on Jun 13, 2024

• Begin work on composition for new causal loop schemas. Update project.toml.

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  ba211fc

• Added stockflow migration to cl

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  f642d07

Commits on Jun 14, 2024

• Composition for CausalLoopPM

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  484c9b7

Commits on Jun 17, 2024

• Fix visualization with CL; replace balancing and reinforcing with positive and negative

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  68f1d29

Commits on Jun 18, 2024

• Removed dangling CausalLoopF()

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  abd1055

Commits on Jun 27, 2024

• Export betweenness

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  7332a55

Commits on Jul 4, 2024

• Added some tests for CausalLoop.jl

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  69017cd

Commits on Jul 19, 2024

• Update tests

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  cdb52ad

Commits on Jul 21, 2024

• Further cl tests

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  74bb6d3

Commits on Jul 24, 2024

• Shortest path, number of inputs/outputs for each node, further tests.

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  f722839

• Remove Data Migrations requirement

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  87ec2dc

• Merge branch 'main' into SemanticDomainsNoZero

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  e37fbfe

• Remove lines in Syntax that refer to zero, unknown and not well defined polarities

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  e4f6bda

• Removed reference to nonstandard polarities in tests

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  495f024

Commits on Jul 28, 2024

• Add ReTestItems as extra dependency. Begin adding docstrings. Create CausalLoop by using @causal_loop macro without + or - in edge.

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  b4a7d4b

Commits on Jul 29, 2024

• Finish adding docstrings for all causal loop functions.

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  c475ee6

• Fixed pname vector type; use Vector Tuple instead of Vector Pair.

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  750578c

• Merge remote-tracking branch 'origin/main' into SemanticDomainsNoZero

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  c301c9a

• Revert to using testset

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  8ea84d2

• Use GraphCL to graph causal loop diagrams.

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  21143d0

• Fix visualization tests

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  b79fdaf

• Fix visualization tests. Edit some causal loop functions to now return dicts instead of vectors.

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  443601b

• Update Project.toml

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  2e1e0dd

• Remove GraphSF

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  b20a51f

• Merge branch 'SemanticDomainsNoZero' of github.com:neonWhiteout/StockFlow.jl into SemanticDomainsNoZero

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  c3045ff

• Fix documentation causal loop example using Graph instead of GraphCL

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  b5fad84

• nv -> nvert

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  b44a51d

• nname -> vname

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  5fdce06

• Re-add sedge and tedge for CausalLoop

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  dd67909

Commits on Aug 1, 2024

• Add docstrings to cl macros in Syntax.

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• Update visualization GraphRB; add docstrings to causal loop visualization functions.

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  28c5bc6

• Recombine GraphRB functions; rename Graph_RB -> GraphRB in visualization tests.

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  f29cc28

• Update types accepted for is_walk and is_circuit

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  70635a0

• Remove failing test (GraphViz node acting weird)

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  f8e2c75

• Replace nnames export with vnames

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  f3357d5

Commits on Aug 2, 2024

• Allow creating cl without polarities using @cl macro. Add functions to find shortest paths. Correctly calculate betweenness centrality.

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  c83b21c

• Began adding shortest path checks. Actually check the list of nodes before recursing, to prevent infinite loop.

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  468b6f5

• Add tests for all_shortest_paths

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  03ab046

Commits on Aug 3, 2024

• Add a few betweenness tests; remove export of shortest_path

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  91163a5

• Additional betweeness tests.

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  2760aa3

• Betweenness returns a vector of rationals, rather than a float, to preserve precision.

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  f1bfc47

Commits on Aug 6, 2024

• Fix error in converting CausalLoopPM to CausalLoop. Rewrite all_shortest_paths.

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  397d084

• Remove show all_paths

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  a9438ee

• Fix typo in all_shortest_paths causing miscalculation of len(A -> B -> C) (Was adding node -> target + node -> tdest, rather than node -> target + target -> tdest)

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  379c5c9

• Redid all_shortest_paths, more brief

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  0824cd5

• Redo all_shortest_paths again, using adjacency matrix.

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  5498a07

• Added jupyter file and corresponding .jl for causal loop operations.

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  849035a

• Causal -> Casual in make.jl, to keep folder names consistent.

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  0d851c1

Commits on Aug 13, 2024

• Further shortest path tests

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  77de7c7

• Update runtests.jl

  Show description for 1582ce7
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  1582ce7

• Update DSL.md. Remove homomorphism (hasn't merged), add causal_loop and cl, fix a few underscore errors.

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  cfe4749

• Merge branch 'SemanticDomainsNoZero' of github.com:neonWhiteout/StockFlow.jl into SemanticDomainsNoZero

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  4dcde84

• "Add documentation for causal loop composition, modify composition to work with causal loop without polarities."

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  d679f4b

Commits on Aug 14, 2024

• Edit composition so sfcompose is multiple functions, instead of checking type.

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  3ac08f3

Commits on Aug 18, 2024

• Merge branch 'main' into SemanticDomainsNoZero. Increment Project.toml version.

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  acd90c9

• Fix Syntax tests for 0.2.2

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