update query utility to support non-integer jobids (e.g. flux) #344

	name: System mode
	on:
	push:
	branches: [ main, dev ]
	pull_request:
	branches: [ main, dev ]
	jobs:
	test:
	name: System-level Omnistat
	runs-on: ubuntu-22.04
	strategy:
	matrix:
	execution: [ source, package ]
	steps:
	- name: Check out repository code
	uses: actions/checkout@v4
	- name: Comment out GPU devices (not available in GitHub)
	run: sed -i "/devices:/,+2 s/^/#/" test/docker/slurm/compose.yaml
	- name: Disable SMI collector (won't work in GitHub)
	run: >
	sed -i "s/enable_rocm_smi = True/enable_rocm_smi = False/" \
	test/docker/slurm/omnistat-system.config
	- name: Start containerized environment
	env:
	TEST_OMNISTAT_EXECUTION: ${{ matrix.execution }}
	run: docker compose -f test/docker/slurm/compose.yaml up -d
	- name: Wait for Prometheus
	run: >
	timeout 1m bash -c \
	'until $(curl -o /dev/null --fail -s localhost:9090/metrics); do \
	echo "Waiting for Prometheus..."; \
	sleep 5; \
	done'
	- name: Wait for Omnistat
	run: >
	timeout 15m bash -c \
	'until [[ $(curl -s -g "localhost:9090/api/v1/query?query=up{instance=\"node1:8001\"}>0" \| jq ".data.result\|length") != 0 ]]; do \
	echo "Waiting for Omnistat..."; \
	sleep 15; \
	done'
	- name: Display node logs
	run: for i in node1 node2; do docker logs slurm-$i; done
	- name: Install test dependencies
	run: pip3 install -r test/requirements.txt
	- name: Run tests
	working-directory: ./test
	run: pytest -v test_integration.py test_job_system.py

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