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0.12.0

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@yannickspill yannickspill released this 03 Jun 15:48
· 88 commits to master since this release

Added

  • First part of decay in fast binless is not forced to decrease. Use free_diag
    argument to decide (default 10kb)
  • patchno column to fast binless output
  • allow to pass a vector of lambda2 values to fast binless
  • allow to pass lambda1 to get thresholdings similar to optimized binless
  • allow to use final output of optimized binless as input to fast binless

Changed

  • Exposures are now fit separately
  • Use nobs column in fast binless
  • ncounts becomes nobs in optimized binless
  • Use same column names in fast and optimized binless outputs
  • fast binless model now mimicks that of slow binless
    • using binwise averages (breaks backwards compatibility)
    • using negative binomial with fixed dispersion
  • require pos1 and pos2 columns in fast binless input
  • fits in optimized binless are performed by group and are more efficient
    memorywise
  • drop stan dependency and fit dispersion manually on a subset of rows, taking
    the median value
  • Switch to BIC to estimate lambda2
  • reorder arguments in fast_binless

Fixed

  • sigma parameter was ignored in GeneralizedAdditiveModel
  • output matrix properly returns factor labels for name, bin1 and bin2 in fast binless
  • bug causing weights to be twice too small
  • centering bug on first iteration of fast binless
  • bugs in the BIC calculation of optimized binless, causing lambda2 estimates to
    be too low and unstable
  • Bug in fast binless when entire rows had nobs == 0