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Using my own metabolic map that I drew on escher #345

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abshah1 opened this issue Mar 24, 2021 · 1 comment
Open

Using my own metabolic map that I drew on escher #345

abshah1 opened this issue Mar 24, 2021 · 1 comment

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@abshah1
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abshah1 commented Mar 24, 2021

Hi,
So I am attempting to do FBA using a python code on Jupyter notebook. I have built my own metabolic map using esher but have run into issues when trying to input this map within the code as I cannot download it from escher. Are there ways to use my map without having to upload to escher? If not how do I upload to escher? Any help would be greatly appreciated. Thanks.
@jacobmartin2022
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jacobmartin2022 commented Jul 16, 2021 •
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In the Escher web browser, save your map as a json, then in python, do

builder = Builder()
builder.map_json = 'my_json_file.json'

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@jacobmartin2022 @abshah1